Job Description P0AGI8 Confidence 100.00% Date Thu Jan 5 11:29:17 GMT 2012 Rank 2 Aligned Residues 437 % Identity 15% Template c3u6nC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:high-conductance ca2+-activated k+ channel protein; PDBTitle: open structure of the bk channel gating ring Resolution 3.61 Å

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		2	.	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.						20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure													.	.								.	.	.	.	.											.	.	.															.
Query SS confidence													.	.								.	.	.	.	.											.	.	.															.
Query Sequence		K	I	I	I	L	G	A	G	Q	V	G	.	.	G	T	L	A	E	N	L	.	.	.	.	.	V	G	E	N	N	D	I	T	V	V	.	.	.	D	T	N	G	E	R	L	R	T	L	Q	D	K	F	.	D	L	R	V	V	Q	G	H	G	S	H	P	R	V	L	R	E	A	G	A	D	D	A	D	M	L	V
Query Conservation													.	.								.	.	.	.	.											.	.	.															.
Alig confidence													.	.								.	.	.	.	.											.	.	.															.
Template Conservation
Template Sequence		H	I	V	V	C	G	H	I	T	L	E	S	V	S	N	F	L	K	D	F	L	H	K	D	R	D	D	V	N	V	E	I	V	F	L	H	N	I	S	P	N	L	E	L	E	A	L	F	K	R	H	F	T	Q	V	E	F	Y	Q	G	S	V	L	N	P	H	D	L	A	R	V	K	I	E	S	A	D	A	C	L
Template Known Secondary structure								S														S	S	S	S	S			T	T									S															T	T						S		T	T								T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		71	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.
Query Sequence		A	V	T	S	S	.	.	.	.	.	.	.	.	D	E	T	N	M	V	A	C	Q	V	A	Y	S	L	F	N	T	P	N	R	I	A	R	I	R	S	P	D	Y	V	R	D	A	D	K	L	F	H	S	D	A	V	P	I	D	H	L	I	A	P	E	Q	L	V	I	D	N	I	Y	R	L	I	E	Y	P	G	A
Query Conservation							.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	N	K	Y	C	A	D	P	D	A	E	D	A	S	N	I	M	R	V	I	S	I	K	N	Y	H	P	K	I	R	I	I	T	Q	M	L	Q	Y	H	N	K	A	H	L	L	N	I	P	S	W	N	W	K	E	G	D	D	A	I	C	L	A	E	L	K	A	G	F	I	A	Q	S	C	L	A	Q	G	L
Template Known Secondary structure						T	T		S																					S	S								S	S							G	G	G	S	T	T			T	T	T	T																				S	T	T
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		143	.	.	.	.	.	.	150	.	.	.																			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																					.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																					.
Query Sequence		L	Q	V	V	N	F	A	E	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	A	V	V	K	A	Y	Y	G	G	P	L	I	G	N	A	L	S	T	M	.	R	E	H	M	P	H	I	D	T	R	V	A	A	I	F	R	H	D	R	P	.	I	R	P	Q	G	S	T	I
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																					.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																					.
Template Conservation
Template Sequence		S	T	M	L	A	N	L	F	S	M	R	S	Y	I	K	I	E	E	D	T	W	Q	K	Y	Y	L	E	G	V	A	N	E	M	Y	T	E	Y	L	S	S	A	F	V	G	L	S	F	P	T	V	C	E	L	C	Y	V	K	L	K	L	L	L	I	A	I	E	Y	K	K	R	I	L	I	N	P	G	N	H	V	K
Template Known Secondary structure								T	T	S								S	S		S										T										G	G	G	T	T	S	B												S																S			T	T		B
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																										.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	A	G	D	E	V	F	F	I	A	A	S	Q	H	I	R	A	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	L	Q	R	L	E	K	P	Y	K	R	I	M	L	V	G	G	G	N	I	G	A	G	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	Q	E	G	T	L	G	F	F	I	A	S	D	A	K	E	V	K	R	A	F	F	K	R	Y	D	S	T	G	M	F	H	W	C	P	S	K	E	I	E	K	V	I	L	T	R	S	E	A	S	M	T	V	L	S	G	H	V	V	V	C	I	F	G	D	V	T	S	A	L	V	G	L	R	N	L	V	M	P	L
Template Known Secondary structure				S	S								S	S						T	T							T	T	S	S	B	B							G	G	G	T	B									S				S										T	T	S					T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
			248	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure		.					.																									.	.	.																																	.	.	.	.
Query SS confidence		.					.																									.	.	.																																	.	.	.	.
Query Sequence		.	A	R	R	L	.	E	K	D	Y	S	V	K	L	I	E	R	N	Q	Q	R	A	A	E	L	A	E	K	L	Q	.	.	.	N	T	I	V	F	F	G	D	A	S	D	Q	E	L	L	A	E	E	H	I	D	Q	V	D	L	F	I	A	V	T	N	D	.	.	.	.	D	E	A	N	I	M	S	A	M	L	A
Query Conservation		.					.																									.	.	.																																	.	.	.	.
Alig confidence		.					.																									.	.	.																																	.	.	.	.
Template Conservation
Template Sequence		R	A	S	N	F	H	Y	H	E	L	K	P	I	V	F	V	G	S	L	D	Y	L	R	R	E	W	E	T	L	H	N	F	P	K	V	F	I	L	P	G	T	P	L	S	R	A	D	L	R	A	V	N	I	N	L	C	D	M	C	V	I	L	S	A	N	A	S	L	Q	D	K	E	C	I	L	A	S	L	N	I
Template Known Secondary structure		G	B	T	T	S		T	T	T																		T	T	T	T	T	S	S	S						S		T	T								T	T	G	G	G		S											G	G	G
Template Predicted Secondary structure
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.
		319	320	.						.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.															.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure					.	.	.	.	.				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence					.	.	.	.	.				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		K	R	M	.	.	.	.	.	G	A	K	.	K	V	M	V	L	I	Q	R	R	A	Y	V	D	L	V	Q	G	S	V	I	D	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	P	Q	Q	A	T	I	S	A	L	L	S	H	V	R	K	A	D	I	V	G	V	S	S	.	.	.	.	.	.
Query Conservation					.	.	.	.	.				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence					.	.	.	.	.				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	M	Q	F	D	T	T	G	S	N	I	P	I	I	T	E	L	V	N	D	S	N	V	Q	F	L	D	Q	D	D	D	D	D	P	D	T	E	L	Y	L	T	Q	P	F	A	C	G	T	A	F	A	V	S	V	L	D	S	L	M	S	A	T	Y	F	N	D	N	I	L	T	L	I	R	T	L	V	T	G	G
Template Known Secondary structure			T							G	G	G	S							S		G	G	G					S	S	S	S				S	S	S		G	G	G	S						T	S				G	G	G	G	G	G																					S
Template Predicted Secondary structure
Template SS confidence
		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.
																								373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.					.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.															.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.															.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	G	V	A	E	A	I	E	A	V	A	H	G	D	E	S	T	S	R	V	V	G	R	V	I	D	E	I	K	L	.	.	.	.	P	P	G	T	I	I	G	A	V	V	R	G	N	D	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.															.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	E	A	L	L	A	E	E	N	A	L	R	G	G	Y	S	T	P	Q	T	L	A	N	R	D	R	C	R	V	A	Q	L	A	L	Y	D	G	P	F	A	D	L	G	D	G	G	C	Y	G	D	L	F	C	K	A	L	K	T	Y	N	M	L	C	F	G	I	Y	R	L	R	D	A	P	S	Q	C	T	K	R
Template Known Secondary structure											S	S								T	T	T	T	T	G	G	G									S	S	S		T	T	G	G	G	T	T	T		B																						B	S									B
Template Predicted Secondary structure
Template SS confidence
		949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
				419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	M	I	A	N	D	N	L	R	I	E	Q	G	D	H	V	I	M	F	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		Y	V	I	T	N	P	P	Y	E	F	E	M	V	P	T	D	L	I	F	C	L	M
Template Known Secondary structure						S			S	S		B			T	T
Template Predicted Secondary structure
Template SS confidence
		1036	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.