Job Description P0AGI8 Confidence 100.00% Date Thu Jan 5 11:29:17 GMT 2012 Rank 3 Aligned Residues 210 % Identity 22% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	I	I	I	L	G	A	G	Q	V	G	G	T	L	A	E	N	L	V	G	E	N	N	D	I	T	V	V	D	T	N	G	E	R	L	R	T	L	Q	D	K	F	D	L	R	V	V	Q	G	H	G	S	H	P	R	V	L	R	E	A	G	A	D	D	A	D	M	L	V	A	V	T	S	S	D	E	T	N	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	V	I	I	I	G	G	E	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V	I	L	T	P	R	D	E	V	N	L
Template Known Secondary structure																							T	T								S												S	S	S					S		T	T	S								T			T	T								S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	C	Q	V	A	Y	S	L	F	N	T	P	N	R	I	A	R	I	R	S	P	D	Y	V	R	D	A	D	K	L	F	H	S	D	A	V	P	I	D	H	L	I	A	P	E	Q	L	V	I	D	N	I	Y	R	L	I	E	Y	P	G	A	L	Q	V	V	N	F	A	E	G	K	V	S	L	A	V	V	K	A
Query Conservation
Alig confidence																																	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		F	I	A	Q	L	V	M	K	D	F	G	V	K	R	V	V	S	L	V	N	D	P	G	N	M	E	I	F	K	K	M	.	.	.	.	.	.	G	I	T	T	V	L	N	L	T	T	L	I	T	N	T	V	E	A	L	I	F	P	D	E	F	S	S	I	I	P	L	E	Q	G	.	.	.	.	.	I	E	F	L
Template Known Secondary structure										T	S											S	G	G	G								.	.	.	.	.	.	T																					T	T	S					S			S	T	T	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	G	G	P	L	I	G	N	A	L	S	T	M	R	E	H	M	P	H	I	D	T	R	V	A	A	I	F	R	H	D	R	P	I	R	P	Q	G	S	T	I	V	E	A	G	D	E	V	F	F	I	A	A	S	Q	H	I	R	A	V	M	S	E	L
Query Conservation
Alig confidence																		.	.	.																										.
Template Conservation																		.	.	.																										.
Template Sequence		S	V	D	S	P	V	V	G	K	K	L	K	D	L	P	L	.	.	.	P	R	D	S	I	I	A	A	I	V	R	G	G	V	L	V	V	P	R	G	D	T	E	I	L	.	S	D	K	L	Y	V	I	V	S	A	E	A	K	E	T	V	E	E	T	L
Template Known Secondary structure						S	S	T	T		B	T	T	T	S			.	.	.		T	T								S	S	S							T	T		B			.										G	G	G
Template Predicted Secondary structure																		.	.	.																										.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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