Job Description P0AGI8 Confidence 97.75% Date Thu Jan 5 11:29:17 GMT 2012 Rank 116 Aligned Residues 170 % Identity 16% Template c2v6bB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		M	K	I	I	I	L	G	A	G	Q	V	G	G	T	L	A	E	N	L	V	G	E	N	.	.	N	D	I	T	V	V	D	T	N	G	E	R	L	R	T	L	Q	D	K	F	D	L	R	V	V	Q	G	H	G	S	H	P	R	V	L	R	E	A	G	A	D	D	A	D	M	L	V	A	V	T	S	S	D	E	T
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		M	K	V	G	V	V	G	T	G	F	V	G	S	T	A	A	F	A	L	V	L	R	G	S	C	S	E	L	V	L	V	D	R	D	E	D	R	A	Q	A	E	A	E	D	I	A	H	A	A	P	V	S	H	G	T	R	V	W	H	G	G	H	S	E	L	A	D	A	Q	V	V	I	L	T	A	G	A	E	S	R
Template Known Secondary structure										S														T			S							S	S													T	T			G	G	G									G	G	G	G	T	T		S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		79	80	.	.	.	.	.	.	.											.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		N	M	V	A	C	Q	V	A	Y	.	.	.	.	.	.	.	.	.	.	S	L	F	N	T	P	N	R	I	A	R	I	R	S	P	D	Y	V	R	D	A	D	K	L	F	H	S	D	A	V	P	I	D	H	L	I	A	P	.	.	.	.	E	Q	L	V	I	D	N	I	Y	R	L	I	E	Y	P	G	A	L	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																						.	.	.	.														.	.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		L	D	L	L	E	K	N	A	D	I	F	R	E	L	V	P	Q	I	T	R	A	A	P	D	A	V	L	L	V	T	S	N	P	V	D	L	L	T	D	L	.	.	.	.	A	T	Q	L	A	P	G	Q	P	V	I	G	S	G	T	V	L	D	S	A	R	F	R	H	L	M	A	Q	H	A	G	V	D	G	T	H
Template Known Secondary structure																								T	T	S						S	S	S								.	.	.	.						T	T	S						T	T																T	S		G	G	G
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	N	F	A	E	G	K	V	S	L	A	V	V	K	A	Y	Y	G	G	P	L	I	G	N	A	L	S	T	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	H	G	Y	V	L	G	E	H	G	D	S	E	V	L	A	W	S	S	A	M	V	A	G	M	P	V	A	D	F
Template Known Secondary structure								B	S	S	S	T	T					G	G	G				T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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