Job Description P0AGI8 Confidence 96.24% Date Thu Jan 5 11:29:17 GMT 2012 Rank 459 Aligned Residues 142 % Identity 15% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		P	H	I	D	T	R	V	A	A	I	F	R	H	D	R	P	I	R	P	Q	G	S	T	I	V	E	A	G	D	E	V	F	F	I	A	A	S	Q	H	I	R	A	V	M	S	E	L	Q	R	L	E	K	P	Y	K	R	I	M	L	V	G	G	G	N	I	G	A	G	L	A	R	R	L	E	K	.	.	D	Y	S
Query Conservation																																																																													.	.
Alig confidence																																.	.	.	.	.	.																													.											.	.
Template Conservation																																.	.	.	.	.	.																													.
Template Sequence		D	Y	Q	D	V	I	V	F	Q	S	A	T	Y	G	K	V	L	V	L	D	G	V	I	Q	L	T	E	R	D	E	.	.	.	.	.	.	C	A	Y	Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	.	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q
Template Known Secondary structure		S	S									S	S	S		B					T	T						S	T	T		.	.	.	.	.	.								T					T	T	S	S	S								S		S	S	.	S							T	T		T	T
Template Predicted Secondary structure																																.	.	.	.	.	.																													.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.							.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.										.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310								.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Query Sequence		V	K	L	I	E	R	N	Q	Q	R	A	A	E	L	A	E	K	L	.	.	.	.	.	.	.	.	.	Q	N	T	I	V	F	F	G	D	A	S	D	Q	E	L	L	A	E	E	H	I	D	Q	V	D	L	F	I	A	V	T	N	D	D	E	A	.	.	.	.	.	.	.	N	I	M	S	A	M	L	A	K	R
Query Conservation																				.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.											.	.																									.	.	.	.	.	.	.
Template Conservation																																							.	.
Template Sequence		I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	.	.	V	A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A
Template Known Secondary structure																				T	T	T	G	G	G	T	T		T	T						S			.	.						S	S		S	S												S	S	S	G	G	G	G	G	G	S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		321	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	A	K	K	V	M	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	P	G	G	V	V	C	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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