Job Description P0ABJ1 Confidence 99.55% Date Thu Jan 5 11:15:35 GMT 2012 Rank 21 Aligned Residues 184 % Identity 7% Template c3mk7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase Resolution 3.20 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		I	L	T	A	F	G	L	M	L	I	V	V	I	P	A	I	L	M	A	V	G	F	A	W	K	Y	R	A	S	N	K	D	A	K	Y	S	P	N	W	S	H	.	.	.	.	.	.	.	.	S	N	K	V	E	A	V	V	W	T	V	P	I	L	I	I	I	F	L	A	V	L	T	W	K	T	T	H	A	L	E
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence									.																																		.	.	.	.	.	.	.	.												.																			.
Template Conservation									.																																																					.																			.
Template Sequence		T	F	W	S	G	Y	I	.	A	L	L	T	L	G	T	I	V	A	L	F	W	L	I	F	A	T	R	K	G	E	S	A	G	T	T	D	Q	T	M	G	H	A	F	D	G	I	E	E	Y	D	N	P	L	P	R	W	W	F	L	L	.	F	I	G	T	L	V	F	G	I	L	Y	L	V	L	Y	P	G	L	.
Template Known Secondary structure									.																		T	T	T	T			S	S							S			B	T	T	B															.															S	T	T	S	.
Template Predicted Secondary structure									.																																																					.																			.
Template SS confidence
		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	K	P	L	A	H	D	E	K	P	I	T	I	E	V	V	S	M	D	W	K	W	F	F	I	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	G	I	A	T	V	N	E	I	A	F	P	A	N	T	P	V	Y	F	K	V	T	S	N	S	V	M	N	S	F	F
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.											.	.
Template Conservation		.	.	.	.	.	.	.																																																												.	.											.	.
Template Sequence		.	.	.	.	.	.	.	G	N	W	K	G	V	L	P	G	Y	E	G	G	W	T	Q	E	K	Q	W	E	R	E	V	A	Q	A	D	E	K	Y	G	P	I	F	A	K	Y	A	A	M	S	V	E	E	V	A	Q	D	P	Q	A	V	K	M	G	A	R	L	.	.	F	A	N	Y	C	S	I	C	H	G	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	T	T						T	T	S	T	T	S																											T	S							T												.	.					T						.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																												.	.											.	.
Template SS confidence
									80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	R	L	G	S	Q	I	Y	A	M	A	G	M	Q	T	R	L	H	L	I	A	N	E	P	G	T	Y	D	G	I	S	A	S	Y	S	G	P	G	F	S	G	M	K	F	K	A	I	A	T	P	D	R	A	A	F	D	Q	W	V	A	K	A	K	Q	S	P	N	T
Query Conservation
Alig confidence		.	.																																																	.
Template Conservation		.	.																																																	.
Template Sequence		.	.	S	D	A	K	G	S	L	G	F	P	N	L	A	D	Q	D	W	R	W	G	G	D	A	A	S	I	K	T	S	I	L	N	G	R	I	A	A	M	P	A	W	G	Q	A	I	G	E	E	.	G	V	K	N	V	A	A	F	V	R	K	D	L	A	G	L	P	L
Template Known Secondary structure		.	.	T	T	S			B	T	T	B			S	S	S	S			S	S			S																B											.												T	T	T
Template Predicted Secondary structure		.	.																																																	.
Template SS confidence
				149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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