Job Description P0ABJ1 Confidence 100.00% Date Thu Jan 5 11:15:35 GMT 2012 Rank 12 Aligned Residues 140 % Identity 19% Template c1xmeB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.30 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																											.	.	.	.	.	130
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	S	P	N	W	S	H	S	N	K	V	E	A	V	V	W	T	V	P	I	L	I	I	I	F	L	A	V	L	T	W	K	T	T	H	A	L	E	P	S	K	P	L	A	H	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	I	T	I	E
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	H	K	A	H	K	A	I	L	A	Y	E	K	G	W	L	A	F	S	L	A	M	L	F	V	F	I	A	L	I	A	Y	T	L	A	T	H	T	A	G	V	I	P	A	G	K	L	E	R	V	D	P	T	T	V	R	Q	E	G	P	W	A	D	P	A	Q	A	V	V	Q	T	G	P	N	Q	Y	T	V	Y
Template Known Secondary structure																																						S	G	G	G	G	G	S				S			B			T	T	S	T	T	T	S	S	T	T	T		G	G	G	S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	S	M	D	W	K	W	F	F	I	Y	P	E	Q	G	I	A	T	V	N	E	I	A	F	P	A	N	T	P	V	Y	F	K	V	T	S	N	S	V	M	N	S	F	F	I	P	R	L	G	S	Q	I	Y	A	M	A	G	M	Q	T	R	L	H	L	I	A	N	E	P	G	T	Y	D	G	I	S	A	S	Y
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	A	F	A	F	G	Y	.	.	.	.	.	.	.	.	.	.	Q	P	N	P	I	E	V	P	Q	G	A	E	I	V	F	K	I	T	S	P	D	V	I	H	G	F	H	V	E	G	T	N	I	N	V	E	V	L	P	G	E	V	S	T	V	R	Y	T	F	K	R	P	G	E	Y	R	I	I	C	N	Q	Y
Template Known Secondary structure						T	T			.	.	.	.	.	.	.	.	.	.		S	S	S					T	T	S								B	S	S	S							T	T	S	S							B	T	B										S										S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	P	G	F	S	G	M	K	F	K	A	I	A	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	L	G	H	Q	N	M	F	G	T	I	V	V	K	E
Template Known Secondary structure			S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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