Job Description P0ABJ1 Confidence 100.00% Date Thu Jan 5 11:15:35 GMT 2012 Rank 5 Aligned Residues 198 % Identity 19% Template c1v55B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state Resolution 1.90 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	D	P	K	G	Q	I	G	L	E	Q	R	S	L	I	L	T	A	F	G	L	M	L	I	V	V	I	P	A	I	L	M	A	V	G	F	A	W	K	Y	R	A	S	N	K	D	A	K	Y	S	P	N	W	S	H	S	N	K	V	E	A	V	V	W	T	V	P	I	L	I	I	I	F	L	A	V	L	T
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.
Template Sequence		G	F	Q	D	A	T	S	P	I	M	E	E	L	L	H	F	H	D	H	T	L	M	I	V	F	L	I	S	S	L	V	L	Y	I	I	S	L	M	L	T	T	K	L	T	H	T	S	.	.	.	.	.	.	.	T	M	D	A	Q	E	V	E	T	I	W	T	I	L	P	A	I	I	L	I	L	I	A	L	P	S
Template Known Secondary structure		S					S	S																																T	S		S					S	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	T	T	H	A	L	E	P	S	K	P	L	A	H	D	E	K	P	I	T	I	E	V	V	S	M	D	W	K	W	F	F	I	Y	P	E	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	V	N	E	I	A	F	P	A	N	T	P	V	Y	F	K	V	T
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence		L	R	I	L	Y	M	M	D	E	I	.	.	.	.	.	N	N	P	S	L	T	V	K	T	M	G	H	Q	W	Y	W	S	Y	E	Y	T	D	Y	E	D	L	S	F	D	S	Y	M	I	P	T	S	E	L	K	P	G	E	L	R	L	L	E	V	D	N	R	V	V	L	P	M	E	M	T	I	R	M	L	V	S
Template Known Secondary structure										S		.	.	.	.	.				S									T	T								S	S	S								B			G	G	G			T	T			T	T	T		B	S	S						T	T	S
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	S	V	M	N	S	F	F	I	P	R	L	G	S	Q	I	Y	A	M	A	G	M	Q	T	R	L	H	L	I	A	N	E	P	G	T	Y	D	G	I	S	A	S	Y	S	G	P	G	F	S	G	M	K	F	K	A	I	A	T	P	D	R	A	A	F	D	Q	W	V	A	K	A
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		S	E	D	V	L	H	S	W	A	V	P	S	L	G	L	K	T	D	A	I	P	G	R	L	N	Q	T	T	L	M	S	S	R	P	G	L	Y	Y	G	Q	C	S	E	I	C	G	S	N	H	S	F	M	P	I	V	L	E	L	V	.	P	L	K	Y	F	E	K	W	S	A	S	M
Template Known Secondary structure			S	S	S							G	G	G	T							T	T										S	S										S			S	T	T	G	G	G									.												T
Template Predicted Secondary structure																																																													.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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