Job Description P0ABJ1 Confidence 100.00% Date Thu Jan 5 11:15:35 GMT 2012 Rank 3 Aligned Residues 212 % Identity 21% Template c1m57H_ PDB info PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) Resolution 3.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	A	L	L	D	P	K	G	Q	I	G	L	E	Q	R	S	L	I	L	T	A	F	G	L	M	L	I	V	V	I	P	A	I	L	M	A	V	G	F	A	W	K	Y	R	A	S	N	K	D	A	K	Y	S	P	N	W	S	H	S	N	K	V	E	A	V	V	W	T	V	P	I	L	I	I	I	F	L	A	V
Query Conservation
Alig confidence																																																			.	.
Template Conservation																																																			.	.
Template Sequence		G	T	G	F	Q	P	S	A	S	P	V	A	T	Q	I	H	W	L	D	G	F	I	L	V	I	I	A	A	I	T	I	F	V	T	L	L	I	L	Y	A	V	W	R	F	H	E	K	R	N	.	.	K	V	P	A	R	F	T	H	N	S	P	L	E	I	A	W	T	I	V	P	I	V	I	L	V	A	I	G	A
Template Known Secondary structure				S						S																																			T	S	T	T	T	S	.	.		S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																																							.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	W	K	T	T	H	A	L	E	P	S	K	P	L	A	H	D	E	K	P	I	T	I	E	V	V	S	M	D	W	K	W	F	F	I	Y	P	E	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		F	S	L	P	V	L	F	N	Q	Q	E	I	.	.	.	.	.	P	E	A	D	V	T	V	K	V	T	G	Y	Q	W	Y	W	G	Y	E	Y	P	D	E	E	I	S	F	E	S	Y	M	I	G	S	P	A	T	G	G	D	N	R	M	S	P	E	V	E	Q	Q	L	I	E	A	G	Y	S	R	D	E	F	L	L
Template Known Secondary structure												S		.	.	.	.	.				S	B							B	T	T	B						T	T	T	T							B	T	T	S	G	G	G	T			S	S													T			G	G	G	G	G	G
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	V	N	E	I	A	F	P	A	N	T	P	V	Y	F	K	V	T	S	N	S	V	M	N	S	F	F	I	P	R	L	G	S	Q	I	Y	A	M	A	G	M	Q	T	R	L	H	L	I	A	N	E	P	G	T	Y	D	G	I	S	A	S	Y	S	G	P	G	F	S	G	M	K	F	K	A	I	A	T	P	D
Query Conservation
Alig confidence																																																																																.
Template Conservation																																																																																.
Template Sequence		A	T	D	T	A	M	V	V	P	V	N	K	T	V	V	V	Q	V	T	G	A	D	V	I	H	S	W	T	V	P	A	F	G	V	K	Q	D	A	V	P	G	R	L	A	Q	L	W	F	R	A	E	R	E	G	I	F	F	G	Q	C	S	E	L	C	G	I	S	H	A	Y	M	P	I	T	V	K	V	V	.	S
Template Known Secondary structure			B	S	S					B	T	T										S	S	S							G	G	G	T							T	T										S	S										S			S	G	G	G	G	S								B	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	F	D	Q	W	V	A	K	A	K	Q	S	P	N	T	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	A	Y	A	A	W	L	E	Q	A	R	G	G	T	Y	E	L
Template Known Secondary structure												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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