Job Description P0ABJ1 Confidence 100.00% Date Thu Jan 5 11:15:35 GMT 2012 Rank 2 Aligned Residues 212 % Identity 20% Template c1ar1B_ PDB info PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment Resolution 2.70 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	A	L	L	D	P	K	G	Q	I	G	L	E	Q	R	S	L	I	L	T	A	F	G	L	M	L	I	V	V	I	P	A	I	L	M	A	V	G	F	A	W	K	Y	R	A	S	N	K	D	A	K	Y	S	P	N	W	S	H	S	N	K	V	E	A	V	V	W	T	V	P	I	L	I	I	I	F	L	A	V
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		G	M	N	F	Q	P	A	S	S	P	L	A	H	D	Q	Q	W	L	D	H	F	V	L	Y	I	I	T	A	V	T	I	F	V	C	L	L	L	L	I	C	I	V	R	F	N	R	R	A	N	P	.	.	V	P	A	R	F	T	H	N	T	P	I	E	V	I	W	T	L	V	P	V	L	I	L	V	A	I	G	A
Template Known Secondary structure				S						S																																			S	S	T	T	T			.	.	S								T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																									.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	W	K	T	T	H	A	L	E	P	S	K	P	L	A	H	D	E	K	P	I	T	I	E	V	V	S	M	D	W	K	W	F	F	I	Y	P	E	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	V	N	E	I	A	F	P	A	N	T	P	V
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		F	S	L	P	I	L	F	R	S	Q	E	M	P	.	.	.	.	N	D	P	D	L	V	I	K	A	I	G	H	Q	W	Y	W	S	Y	E	Y	P	N	D	G	V	A	F	D	A	L	M	L	E	K	E	A	L	A	D	A	G	Y	S	E	D	E	Y	L	L	A	T	D	N	P	V	V	V	P	V	G	K	K	V
Template Known Secondary structure												S			.	.	.	.	S	S		S									T	T							G	G	G	T							B			T	T	T					T			G	G	G	G	G	G		B	S	S						T	T	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	K	V	T	S	N	S	V	M	N	S	F	F	I	P	R	L	G	S	Q	I	Y	A	M	A	G	M	Q	T	R	L	H	L	I	A	N	E	P	G	T	Y	D	G	I	S	A	S	Y	S	G	P	G	F	S	G	M	K	F	K	A	I	A	T	P	D	R	A	A	F	D	Q	W	V	A	K	A	K	Q	S
Query Conservation
Alig confidence																																																																		.
Template Conservation																																																																		.
Template Sequence		L	V	Q	V	T	A	T	D	V	I	H	A	W	T	I	P	A	F	A	V	K	Q	D	A	V	P	G	R	I	A	Q	L	W	F	S	V	D	Q	E	G	V	Y	F	G	Q	C	S	E	L	C	G	I	N	H	A	Y	M	P	I	V	V	K	A	V	.	S	Q	E	K	Y	E	A	W	L	A	G	A	K	E	E
Template Known Secondary structure								S	S	S							G	G	G	T							T	T										S	S	S									S			S	T	T	T	T	S									.
Template Predicted Secondary structure																																																																		.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		242	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	A
Template Known Secondary structure		T	B
Template Predicted Secondary structure
Template SS confidence
		250	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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