Job Description P07117 Confidence 97.59% Date Thu Jan 5 11:00:11 GMT 2012 Rank 7 Aligned Residues 406 % Identity 13% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	S	T	P	M	L	V	T	F	C	V	Y	I	F	G	M	I	L	I	G	F	I	A	W	R	S	T	K	N	F	D	D	Y	I	L	G	G	R	S	L	G	P	F	V	T	A	L	S	A	G	A	S	D	M	S	G	W	L	L	M	G	L	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		V	W	G	W	A	F	E	W	Y	M	V	V	M	L	F	G	W	F	W	L	V	F	G	P	Y	A	K	K	R	L	G	N	E	.	.	.	.	P	P	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P
Template Known Secondary structure																								S	S	S	T	T	S		S	S	S	S	.	.	.	.			S	S											T					S																S		S	T	T			T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
					67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																										.	.	.											.	.
Query SS confidence		.	.	.																																										.	.	.											.	.
Query Sequence		.	.	.	A	V	F	L	S	G	I	S	E	S	W	I	A	I	G	L	T	L	G	A	W	I	N	W	K	L	V	A	G	R	L	R	V	H	T	E	Y	N	N	N	A	.	.	.	L	T	L	P	D	Y	F	T	G	R	.	.	F	E	D	K	S	R	I	L	R	I	I	S	A	L	V	I	L	L	F	F	T
Query Conservation		.	.	.																																										.	.	.											.	.
Alig confidence		.	.	.																																										.	.	.											.	.
Template Conservation
Template Sequence		N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G
Template Known Secondary structure		T																T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.									.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		I	Y	C	A	S	G	I	V	A	G	A	R	L	F	E	S	T	F	G	M	S	Y	E	T	A	L	W	A	G	A	A	A	T	I	L	Y	T	F	I	G	.	.	.	.	.	.	.	.	G	F	L	A	V	S	W	T	D	T	V	Q	A	S	L	M	I	F	A	L	I	L	T	P	V	I	V	I	I	S	V	G
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y
Template Known Secondary structure																T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure													.	.																																		.	.	.
Query SS confidence													.	.																																		.	.	.
Query Sequence		G	F	G	D	S	L	E	V	I	K	Q	.	.	K	S	I	E	N	V	D	M	L	K	G	L	N	F	V	A	I	I	S	L	M	G	W	G	L	G	Y	F	G	Q	P	H	I	.	.	.	L	A	R	F	M	A	A	D	S	H	H	S	I	V	H	A	R	R	I	S	M	T	W	M	I	L	C	L	A	G	A
Query Conservation													.	.																																		.	.	.
Alig confidence													.	.																																		.	.	.
Template Conservation
Template Sequence		F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V
Template Known Secondary structure																		T					S	S								T											T											T		S	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		V	A	V	G	F	F	G	I	A	Y	F	N	D	H	P	A	L	A	G	A	V	N	Q	N	A	E	R	V	F	I	E	L	A	Q	I	L	.	F	N	P	W	I	A	G	I	L	L	S	A	I	L	A	A	V	M	S	T	L	S	C	Q	L	L	V	C	S	S	A	I	T	E	D	L	Y	K	A	F	L	R	K
Query Conservation																																						.
Alig confidence																																						.																																					.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence		L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	.	.	.	.	.	R	D
Template Known Secondary structure												T	T	S								G	G	G												T	S	S	S	T	T																												T	T	S		S	S	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.						.	440
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	S	Q	K	E	L	V	W	V	G	R	V	M	V	L	V	V	A	L	V	A	I	A	L	A	A	N	P	E	N	R	V	L	G	L	V	S	Y	A	W	A	G	F	G	A	A	F	G	P	V	V	L	F	S	V	M
Query Conservation
Alig confidence												.	.																			.	.	.
Template Conservation												.	.																			.	.	.
Template Sequence		G	E	E	P	P	L	L	V	R	I	.	.	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	.	.	.	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L
Template Known Secondary structure		S		S	S		S	T	T			.	.																		S	.	.	.	S
Template Predicted Secondary structure												.	.																			.	.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450			.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.