Job Description P07117 Confidence 99.68% Date Thu Jan 5 11:00:11 GMT 2012 Rank 4 Aligned Residues 413 % Identity 10% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	L	G	P	F	V	T	A	L	S	A	G	A	S	D	M	S	G	W	L	L	M	G	L	P	G	A	V	F	L	S	G	I	S	E	S	W	I	A	I	G	L	T	L	G	A	W	I	N	W	K	L	V	A	G	R	L	R	V	H	T	E	Y	N	N	N	A	L	T	L	P	D	Y	F	T	G	R	F
Query Conservation
Alig confidence																																																														.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	.	.	.	.	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	.	.	.	.	T				T	T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		E	D	K	S	R	I	L	R	I	I	S	A	L	V	I	L	L	F	F	T	I	Y	C	A	S	G	I	V	A	G	A	R	L	F	E	S	T	F	G	.	M	S	Y	E	T	A	L	W	A	G	A	A	A	T	I	L	Y	T	F	I	G	G	F	L	A	V	S	W	T	D	T	V	Q	A	S	L	M	I	F	A
Query Conservation																																									.
Alig confidence			.	.																																					.
Template Conservation			.	.
Template Sequence		G	.	.	D	N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K
Template Known Secondary structure			.	.	S	S																																	T	T																										T
Template Predicted Secondary structure			.	.
Template SS confidence
		81			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	T	P	V	I	V	I	I	S	V	G	G	F	G	D	S	L	E	V	I	K	Q	K	S	I	E	N	V	D	M	L	K	G	L	N	F	V	A	I	I	S	L	M	G	W	G	L	G	Y	F	G	Q	P	H	I	L	A	R	F	M	A	A	D	S	H	H	S	I	V	H	A	R	R	I	S	M	T	W
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.
Template Sequence		L	L	I	L	G	L	F	I	F	A	G	L	.	.	.	.	.	.	.	.	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L
Template Known Secondary structure														.	.	.	.	.	.	.	.					G	G	G	T	S				S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	L	C	L	A	G	A	V	A	V	G	F	F	G	I	A	Y	F	N	D	H	P	A	L	A	G	A	V	N	Q	N	A	E	R	V	F	I	E	L	A	Q	I	L	F	N	P	W	I	A	G	I	L	L	S	A	I	L	A	A	V	M	S	T	L	S	C	Q	L	L	V	C	S	S	A	I	T	E	D	L
Query Conservation
Alig confidence																		.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	.	.	.	.	.	.	.	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A
Template Known Secondary structure																T	T	.	.	.	.	.	.	.	S								T	G	G	G																																			T	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	A	F	L	R	K	H	A	S	Q	K	E	L	V	W	V	G	R	V	M	V	L	V	V	A	L	V	A	I	A	L	A	A	N	P	E	N	R	V	L	G	L	V	S	Y	A	W	A	G	F	G	A	A	F	G	P	V	V	L	F	S	V	M	W	S	R	M	T	R	N	G	A	L	A	G	M	I	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K	E	I	V	I	F	S	F	I	V	V
Template Known Secondary structure				S	S			S	S			T	T	S			S		T																	S																											T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	V	I	V	W	K	Q	F	G	W	L	G	L	Y	E	I	I	P	G	F	I	F	G	S	I	G	I	V	V	F	S	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.