Job Description P07117 Confidence 100.00% Date Thu Jan 5 11:00:11 GMT 2012 Rank 2 Aligned Residues 465 % Identity 15% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	S	T	K	N	F	D	D	Y	I	L	G	G	R	S	L	G	P	F	V	T	A	L	S	A	G	A	S	D	M	S	G	W	L	L	M	G	L	P	G	A	V	F	L	S	G	I	S	E	S	W	I	A	I	G	L	T	L	G	A	W	I	N	W	K	L	V	A	G	R	L	R	V	H	T	E	Y	N	N
Query Conservation
Alig confidence																																																																											.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence		X	X	X	X	X	X	X	X	X	X	X	X	A	G	K	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	.	.	.	.	.	E	K
Template Known Secondary structure																S																	S					T									T		G	G	G																		T						.	.	.	.	.		T
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	L	T	L	P	D	Y	F	T	G	R	F	E	D	K	S	R	I	L	R	I	I	S	A	L	V	I	L	L	F	F	T	I	Y	C	A	S	G	I	V	A	G	A	R	L	F	E	S	T	F	G	M	S	Y	E	T	A	L	W	A	G	A	A	A	T	I	L	Y	T	F	I	G	G	F	L	A	V	S	W
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		G	I	Y	T	I	P	E	F	V	E	K	R	F	N	.	.	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T	D	V	I	Q	V
Template Known Secondary structure		T			S									T		.	.																		T																	T	T																	T	T				S
Template Predicted Secondary structure																.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		T	D	T	V	Q	A	S	L	M	I	F	A	L	I	L	T	P	V	I	V	I	I	S	V	G	G	F	G	D	S	L	E	V	I	K	Q	K	S	I	E	N	V	D	M	L	K	G	L	N	F	.	.	.	.	.	.	.	.	V	A	I	I	S	L	M	G	W	G	L	G	Y	F	G	Q	P	H	I	L	A	R
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R
Template Known Secondary structure																					T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		F	M	A	A	D	S	H	H	S	I	V	H	A	R	R	I	S	M	T	W	M	I	L	C	L	A	G	A	V	A	V	G	F	F	G	I	A	Y	F	N	D	H	P	A	.	.	.	.	.	.	.	.	L	A	G	A	V	N	Q	N	A	E	R	V	F	I	E	L	A	Q	I	L	F	N	P	W	I	A	G	I
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V
Template Known Secondary structure				S	S	S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		L	L	S	A	I	L	A	A	V	M	S	T	L	S	C	Q	L	L	V	C	S	S	A	I	T	E	D	L	Y	K	A	F	L	R	K	H	A	S	Q	K	E	L	V	W	V	G	R	V	M	V	L	V	V	A	L	V	A	I	A	L	A	A	N	.	.	P	E	N	R	V	L	G	L	V	S	Y	A	W	A	G
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L
Template Known Secondary structure																													T							S		S		S	S																					G	G	G	G	G	G		S											T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		F	G	A	A	F	G	P	V	V	L	F	S	V	M	W	S	R	M	T	R	N	G	A	L	A	G	M	I	I	G	A	L	T	V	I	V	W	K	Q	F	G	W	L	G	.	.	L	Y	E	I	I	P	G	F	I	F	G	S	I	G	I	V	V	F	S	L	L	G	K	A	P	S	A	A	M	Q	K	R	F	A
Query Conservation																																														.	.
Alig confidence																																														.	.
Template Conservation
Template Sequence		V	S	P	G	I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V	I	A	F	T	S	L	S	T	S	I	N	D	D	D	P	K	G	I	S	V
Template Known Secondary structure		T															T	T																						T	S	S	S																									T	T		S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	D	A	H	Y	H	S	A	P	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	S	M	F	V	T	D	R	S	F	N
Template Known Secondary structure				S						T	T
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.