Job Description P07117 Confidence 98.22% Date Thu Jan 5 11:00:11 GMT 2012 Rank 6 Aligned Residues 402 % Identity 10% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																.	.	70
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	L	V	T	F	C	V	Y	I	F	G	M	I	L	I	G	F	I	A	W	R	S	T	K	N	F	D	D	Y	I	L	G	G	R	S	L	G	P	F	V	T	A	L	S	A	G	A	S	D	M	S	G	W	L	L	M	G	L	P	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	.	.	.	.	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G
Template Known Secondary structure																		S	G	G	G	G			S	S	S	T	T		.	.	.	.			S	S																																T			T	T	S		S	S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure													.	.																																					.	.
Query SS confidence													.	.																																					.	.
Query Sequence		S	G	I	S	E	S	W	I	A	I	G	.	.	L	T	L	G	A	W	I	N	W	K	L	V	A	G	R	L	R	V	H	T	E	Y	N	N	N	A	L	T	L	P	D	Y	F	T	G	R	.	.	F	E	D	K	S	R	I	L	R	I	I	S	A	L	V	I	L	L	F	F	T	I	Y	C	A	S	G	I	V
Query Conservation													.	.																																					.	.
Alig confidence													.	.																																					.	.
Template Conservation
Template Sequence		V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L
Template Known Secondary structure												S																		T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																								.	.	.	.	.	.
Query SS confidence																																				.	.	.	.																								.	.	.	.	.	.
Query Sequence		A	G	A	R	L	F	E	S	T	F	G	M	S	Y	E	T	A	L	W	A	G	A	A	A	T	I	L	Y	T	F	I	G	G	F	.	.	.	.	L	A	V	S	W	T	D	T	V	Q	A	S	L	M	I	F	A	L	I	L	T	P	V	.	.	.	.	.	.	I	V	I	I	S	V	G	G	F	G	D	S	L
Query Conservation																																				.	.	.	.																								.	.	.	.	.	.
Alig confidence																																				.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L
Template Known Secondary structure								T	T	T	S																			T	T	G	G	G	T	T	S			S																								S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		E	V	I	K	Q	K	S	I	E	N	V	D	M	L	K	G	L	.	.	N	F	V	A	I	I	S	L	M	G	W	G	L	G	Y	F	G	Q	P	H	I	L	A	R	F	M	A	A	D	S	H	H	S	I	V	H	A	R	R	I	S	M	T	W	M	I	L	C	L	A	G	A	V	A	V	G	F	F	G	I	A
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I
Template Known Secondary structure									T			T	T	T	T	S	S								T	T										T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	N	D	H	P	A	L	A	G	A	V	N	Q	N	A	E	R	V	F	I	E	L	A	Q	I	L	F	N	P	W	I	A	G	I	L	L	S	A	I	L	A	A	V	M	S	T	L	S	C	Q	L	L	V	C	S	S	A	I	T	E	D	L	Y	K	A	F	L	R	K	H	A	S	Q	K	E	L	V	W	V
Query Conservation
Alig confidence																																																																.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W
Template Known Secondary structure							T						T	T		S										T	S	T	T																															T	T	T	T	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.							.	.	.	.	.	.	490	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	V	M	V	L	V	V	A	L	V	A	I	A	L	A	A	N	P	E	N	R	V	L	G	L	V	S	Y	A	W	A	G	F	G	A	A	F	G	P	V	V	L	F	S	V	M
Query Conservation
Alig confidence			.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		G	.	.	.	.	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F
Template Known Secondary structure			.	.	.	.															G	G	G
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		496					.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.