Job Description P07117 Confidence 99.69% Date Thu Jan 5 11:00:11 GMT 2012 Rank 3 Aligned Residues 435 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	K	N	F	D	D	Y	I	L	G	G	R	S	L	G	P	F	V	T	A	L	S	A	G	A	S	D	M	S	G	W	L	L	M	G	L	P	G	A	V	F	L	S	G	I	S	E	S	W	I	A	I	G	L	T	L	G	A	W	I	N	W	K	L	V	A	G	R	L	R	V	H	T	E	Y	N	N	N	A
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	.	.	.
Template Known Secondary structure				S	T	T	S				G	G	G			B															S	T										T	T	T	S																								T								.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		L	T	L	P	D	Y	F	T	G	R	F	E	D	K	S	R	I	L	R	I	I	S	A	L	V	I	L	L	F	F	T	I	Y	C	A	S	G	I	V	A	G	A	R	L	F	E	S	T	F	G	.	.	.	.	M	S	Y	E	T	A	L	W	A	G	A	A	A	T	I	L	Y	T	F	I	G	G	F	L	A	V
Query Conservation																																																				.	.	.	.
Alig confidence														.	.	.																																				.	.	.	.
Template Conservation														.	.	.
Template Sequence		I	N	F	T	V	A	A	R	M	P	F	G	.	.	.	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I
Template Known Secondary structure								T	T	T	T	S		.	.	.	T	T	T	T																																																							T	T
Template Predicted Secondary structure														.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	T	D	T	V	Q	A	S	L	M	I	F	A	L	I	L	T	P	V	I	V	I	I	S	V	G	G	F	G	D	S	L	E	V	I	K	Q	K	S	I	E	N	V	D	M	L	K	G	L	N	F	V	A	I	I	S	L	M	G	W	G	L	G	Y	F	G	Q	P	H	I	L	A	R	F	M	A	A	D	S
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	.	.	.	.	.	.	.	.	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V
Template Known Secondary structure																												.	.	.	.	.	.	.	.	T							T	T				S	S			S											T	T	T					T	T	T					T	T	B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	S	I	V	H	A	R	R	I	S	M	T	W	M	I	L	C	L	A	G	A	V	A	V	G	F	F	G	I	A	Y	F	N	D	H	P	A	L	A	G	A	V	N	Q	N	A	E	R	V	F	I	E	L	A	Q	I	L	F	N	P	W	I	A	G	I	L	L	S	A	I	L	A	A	V	M	S	T	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A
Template Known Secondary structure			T	T																																								S		S											T																				T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	L	L	V	C	S	S	A	I	T	E	D	L	Y	K	A	F	L	R	K	H	A	S	Q	K	E	L	V	W	V	G	R	V	M	V	L	V	V	A	L	V	A	I	A	L	A	A	N	P	E	N	R	V	L	G	L	V	S	Y	A	W	A	G	F	G	A	A	F	G	P	V	V	L	F	S	V	M	W	S
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	.	.	.	.	.	.	.	.	.	.	.	.	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V
Template Known Secondary structure				T											S	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.													T		G	G	G	T														T	T													T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.													.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		424	.	.	.	.	.	430																		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	M	T	R	N	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	G	M	I	I	G	A	L	T	V	I	V	W	K	Q	F	G	W	L	G	L	Y	E	I	I	P	G	F	I	F	G	S	I	G	I	V	V	F	S	L	L	G	K	A	P	S	A	A	M	Q	K	R	F	A	E
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D
Template Known Secondary structure		S	T	T								T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		487	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	R	P
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		465	.	.	.