Return to main results Retrieve Phyre Job Id

Job DescriptionP39220
Confidence13.17%DateThu Jan 5 11:58:32 GMT 2012
Rank14Aligned Residues57
% Identity14%Templated1zh5a1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain La domain
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80.........90.........100.........110
Predicted Secondary structure 





















Query SS confidence 



























































Query Sequence  KQTEAYKLLFNFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVA
Query Conservation 









 


        
 






 


 
 
 

  




  

 
    
Alig confidence 











...












































Template Conservation     
  





...

 

  
 


  
    
 


  
  
 


 

     
  
Template Sequence  EAKICHQIEYYF. . . GDFNLPRDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVE
Template Known Secondary structure  T...STTTGGG
TTTTT
TTS


Template Predicted Secondary structure  ...










Template SS confidence 



























































   14.....20..... ....30.........40.........50.........60.........70
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions