Job Description P07023 Confidence 99.51% Date Thu Jan 5 11:00:05 GMT 2012 Rank 47 Aligned Residues 238 % Identity 16% Template c3pefA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, nad-binding; PDBTitle: crystal structure of gamma-hydroxybutyrate dehydrogenase from2 geobacter metallireducens in complex with nadp+ Resolution 2.07 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.													.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query Sequence		R	P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	A	D	A	G	M	V	I	V	S	V	P	I	H	V	T	E	Q	V	I	G	K	.	.	.	.	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Alig confidence									.																											.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation									.
Template Sequence		Q	K	F	G	F	I	G	.	L	G	I	M	G	S	A	M	A	K	N	L	V	K	A	G	C	S	V	T	I	W	N	R	S	P	E	K	A	E	E	L	A	A	L	G	A	E	R	A	A	T	P	E	V	V	E	S	C	P	V	T	F	A	M	L	A	D	P	A	A	A	E	E	V	C	F	G	K	H	G	V
Template Known Secondary structure									.		S													T	T								S	S	G	G	G	G						T	T					S									S							S	S										S	T	T
Template Predicted Secondary structure									.
Template SS confidence
		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		163	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																										.	.	.
Query SS confidence				.																										.	.	.
Query Sequence		P	P	.	L	P	K	D	C	I	L	V	D	L	A	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	.	.	.	D	G	P	V	L	G	L	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I	Q	V	W	G	A	R	L	H
Query Conservation				.																										.	.	.
Alig confidence				.																										.	.	.														.	.
Template Conservation																																														.	.
Template Sequence		L	E	G	I	G	E	G	R	G	Y	V	D	M	S	T	V	D	P	A	T	S	Q	R	I	G	V	A	V	V	A	K	G	G	R	F	L	E	A	P	V	S	G	S	K	.	.	K	P	A	E	D	G	T	L	I	I	L	A	A	G	D	R	N	L	Y	D	E	A	M	P	G	F	E	K	M	G	K	K	I	I
Template Known Secondary structure							T	T							S																	T	T													.	.						T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																															.	.	.	.																																															.
Query SS confidence																															.	.	.	.																																															.
Query Sequence		R	I	S	A	V	E	H	D	Q	N	M	A	F	I	Q	A	L	R	H	F	A	T	F	A	Y	G	L	H	L	.	.	.	.	A	E	E	N	V	Q	L	E	Q	L	L	A	L	S	S	P	I	Y	R	L	E	L	A	M	V	G	R	L	F	A	Q	D	P	Q	L	Y	A	D	I	I	M	S	S	E	R	N	.
Query Conservation																															.	.	.	.																																															.
Alig confidence																															.	.	.	.																					.	.	.	.	.				.	.	.	.															.
Template Conservation																																																							.	.	.	.	.				.	.	.	.
Template Sequence		H	L	G	D	V	G	K	G	A	E	M	K	L	V	V	N	M	V	M	G	G	M	M	A	C	F	C	E	G	L	A	L	G	E	K	A	G	L	A	T	D	A	I	L	D	V	I	G	A	G	A	M	A	.	.	.	.	.	N	P	M	.	.	.	.	F	A	L	K	G	G	L	I	R	D	R	N	F	A	P
Template Known Secondary structure				S	S	T	T																														T	T													S	T	T		.	.	.	.	.				.	.	.	.										T	T
Template Predicted Secondary structure																																																							.	.	.	.	.				.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.						.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		L	A	L	I	K	R	Y	Y	K	R	F	G	E	A	I	E	L	L	E	Q	G	D	.	.	.	.	.	K	Q	A	F	I	D	S	F	R	K	V	E	H
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		A	F	P	L	K	H	M	Q	K	D	L	R	L	A	V	A	L	G	D	R	V	G	Q	P	L	V	A	S	A	A	A	N	E	L	F	K	G	A	R	A
Template Known Secondary structure		S	S	B																			T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions