Job Description P07023 Confidence 99.29% Date Thu Jan 5 11:00:05 GMT 2012 Rank 72 Aligned Residues 223 % Identity 13% Template c3gg2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate Resolution 1.70 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																																		.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	A	D	I	V	A	D	A	G	M	V
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		D	I	A	V	V	G	.	I	G	Y	V	G	L	V	S	A	T	C	F	A	E	L	G	A	N	V	R	C	I	D	T	D	R	N	K	I	E	Q	L	N	S	G	T	I	P	I	Y	E	P	G	L	E	K	M	I	A	R	N	V	K	A	G	R	L	R	F	G	T	E	I	E	Q	A	V	P	E	A	D	I	I
Template Known Secondary structure								.		S													T	T								S										T	T			S	S			T	T											T	T	S					S						G	G	G		S
Template Predicted Secondary structure								.
Template SS confidence
		80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		147	.	.	150	.											.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.											.	.	.	.	.	.	.	200				.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.														.																													.	.	.	.	.	.	.	.	.	.									.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.														.																													.	.	.	.	.	.	.	.	.	.									.	.	.
Query Sequence		I	V	S	V	P	.	.	.	.	.	.	.	.	.	.	I	H	V	T	E	Q	V	I	G	K	L	P	P	.	L	P	K	D	C	I	L	V	D	L	A	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	D	G	P	.	.	.	.	.	.	.	.	.	.	V	L	G	L	H	P	M	F	.	.	.	G	P
Query Conservation							.	.	.	.	.	.	.	.	.	.														.																													.	.	.	.	.	.	.	.	.	.									.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.														.																													.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation
Template Sequence		F	I	A	V	G	T	P	A	G	E	D	G	S	A	D	M	S	Y	V	L	D	A	A	R	S	I	G	R	A	M	S	R	Y	I	L	I	V	T	K	S	T	V	P	V	G	S	Y	R	L	I	R	K	A	I	Q	E	E	L	D	K	R	E	V	L	I	D	F	D	I	A	S	N	P	E	F	L	K	E	G	N
Template Known Secondary structure									B		T	T	S	S	B																		S								S				T	T																T	T																T	T	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.																										.
Query SS confidence																																													.	.																										.
Query Sequence		D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I	Q	V	W	G	A	R	L	H	R	I	S	A	V	E	H	.	.	D	Q	N	M	A	F	I	Q	A	L	R	H	F	A	T	F	A	Y	G	L	H	L	A	E	E	.	N	V	Q	L	E	Q	L	L	A
Query Conservation																																													.	.																										.
Alig confidence																																	.												.	.																										.
Template Conservation																																	.
Template Sequence		A	I	D	D	F	M	K	P	D	R	V	V	V	G	V	D	S	D	R	A	R	E	L	I	T	S	L	Y	K	P	M	.	L	R	V	L	F	M	D	I	A	S	A	E	M	T	K	Y	A	A	N	A	M	L	A	T	R	I	S	F	M	N	D	V	A	N	L	C	E	R	V	G	A	D	V	S	M	V	R	L
Template Known Secondary structure								S		S							S	S												T	T	T	.																																								T
Template Predicted Secondary structure																																	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		280	.	.	.	.	.	.																						.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		L	S	S	P	I	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	L	A	M	V	G	R	L	F	A	Q	D	P	Q	L	Y	A	D	I	I	M	S	S	E	R	N	.	L	A	L	I	K	R	Y	Y	K	R	F
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		G	I	G	S	D	S	R	I	G	S	K	F	L	Y	P	G	C	G	Y	G	G	S	C	F	P	K	D	V	K	A	L	I	R	T	A	E	D	N	G	Y	R	M	E	V	L	E	A	V	E	R	V	N	E	K	Q	K	S	I	L	F	D	K	F	S	T	Y	Y
Template Known Secondary structure					T	S	T	T	T		S	S	S				S	S				S	S	S															T	T																	T	T										T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions