Job Description P07023 Confidence 99.55% Date Thu Jan 5 11:00:05 GMT 2012 Rank 41 Aligned Residues 238 % Identity 12% Template c3g0oA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyisobutyrate dehydrogenase; PDBTitle: crystal structure of 3-hydroxyisobutyrate dehydrogenase2 (ygbj) from salmonella typhimurium Resolution 1.80 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	A	D	A	G	M	V	I	V	S	V	P	.	I	H	V	T	E	Q	V	I	G	K	L	P	P
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence								.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation								.
Template Sequence		H	V	G	I	V	G	.	L	G	S	X	G	X	G	A	A	R	S	C	L	R	A	G	L	S	T	W	G	A	D	L	N	P	Q	A	C	A	N	L	L	A	E	G	A	C	G	A	A	A	S	A	R	E	F	A	G	V	V	D	A	L	V	I	L	V	V	N	A	A	Q	V	R	Q	V	L	F	D	G	V	A
Template Known Secondary structure								.		S													T	T								S											T	T		S				S	S	S	T	T	T	T	T	T		S							S	S													G
Template Predicted Secondary structure								.
Template SS confidence
		8	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
				165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																										.	.	.
Query SS confidence		.	.																										.	.	.
Query Sequence		.	.	L	P	K	D	C	I	L	V	D	L	A	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	.	.	.	D	G	P	V	L	G	L	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I	Q	V	W	G	A	R	L	H	R
Query Conservation		.	.																										.	.	.
Alig confidence		.	.																										.	.	.								.																			.
Template Conservation																																							.																			.
Template Sequence		H	L	X	K	P	G	S	A	V	X	V	S	S	T	I	S	S	A	D	A	Q	E	I	A	A	A	L	T	A	L	N	L	N	X	L	D	A	.	P	V	S	G	G	A	V	K	A	A	Q	G	E	X	T	V	X	A	.	S	G	S	E	A	A	F	T	R	L	K	P	V	L	D	A	V	A	S	N	V	Y	R
Template Known Secondary structure		G	G	S		T	T							S																T	T	T							.				S							T	T							.
Template Predicted Secondary structure																																							.																			.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		I	S	A	V	E	H	D	Q	N	M	A	F	I	Q	A	L	R	H	F	A	T	F	A	Y	G	L	H	.	.	.	.	.	L	A	E	E	N	V	Q	L	E	Q	L	L	A	L	S	S	P	I	Y	R	L	E	L	A	M	V	G	R	L	F	A	Q	D	P	Q	L	Y	A	D	I	I	M	S	S	E	R	N	L
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.																						.	.	.	.					.	.	.	.
Template Conservation																																																							.	.	.	.					.	.	.	.
Template Sequence		I	S	D	T	P	G	A	G	S	T	V	K	I	I	H	Q	L	L	A	G	V	H	I	A	A	A	A	E	A	X	A	L	A	A	R	A	G	I	P	L	D	V	X	Y	D	V	V	T	H	A	A	G	N	.	.	.	.	S	W	X	F	.	.	.	.	E	N	R	X	Q	H	V	V	D	G	D	Y	T	P	R
Template Known Secondary structure				S	S	T	T																														T	T											T	T	S	T	T		.	.	.	.					.	.	.	.									T	T					S
Template Predicted Secondary structure																																																							.	.	.	.					.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		A	L	I	K	R	Y	Y	K	R	F	G	E	A	I	E	L	L	E	Q	G	D	K	.	.	.	.	.	Q	A	F	I	D	S	F	R	K	V	E	H
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		S	A	V	D	I	F	V	K	D	L	G	L	V	A	D	T	A	K	A	L	R	F	P	L	P	L	A	S	T	A	L	N	X	F	T	S	A	S	N
Template Known Secondary structure		S	B																		T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions