Job Description P07023 Confidence 99.58% Date Thu Jan 5 11:00:05 GMT 2012 Rank 33 Aligned Residues 243 % Identity 16% Template c3ckyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:2-hydroxymethyl glutarate dehydrogenase; PDBTitle: structural and kinetic properties of a beta-hydroxyacid dehydrogenase2 involved in nicotinate fermentation Resolution 2.30 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.														.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query Sequence		P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	A	D	A	G	M	V	I	V	S	V	P	I	H	V	T	E	Q	V	I	.	.	.	.	G	K	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Alig confidence								.																											.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation								.
Template Sequence		K	I	G	F	I	G	.	L	G	A	M	G	K	P	M	A	I	N	L	L	K	E	G	V	T	V	Y	A	F	D	L	M	E	A	N	V	A	A	V	V	A	Q	G	A	Q	A	C	E	N	N	Q	K	V	A	A	A	S	D	I	I	F	T	S	L	P	N	A	G	I	V	E	T	V	M	N	G	P	G	G	V
Template Known Secondary structure								.			T	T											T	T								S	S									T	T	T					S	S									S							S	S										S	T	T
Template Predicted Secondary structure								.
Template SS confidence
		6	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		163	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																										.	.	.
Query SS confidence				.																										.	.	.
Query Sequence		P	P	.	L	P	K	D	C	I	L	V	D	L	A	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	.	.	.	D	G	P	V	L	G	L	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I	Q	V	W	G	A	R	L	H
Query Conservation				.																										.	.	.
Alig confidence				.																										.	.	.														.	.
Template Conservation																																														.	.
Template Sequence		L	S	A	C	K	A	G	T	V	I	V	D	M	S	S	V	S	P	S	S	T	L	K	M	A	K	V	A	A	E	K	G	I	D	Y	V	D	A	P	V	S	G	G	T	.	.	K	G	A	E	A	G	T	L	T	I	M	V	G	A	S	E	A	V	F	E	K	I	Q	P	V	L	S	V	I	G	K	D	I	Y
Template Known Secondary structure					S		T	T																								T	T										S			.	.						T								S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																		.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	S	A	V	E	H	D	Q	N	M	A	F	I	Q	A	L	R	H	F	A	T	F	A	Y	G	L	.	.	.	.	H	L	A	E	E	N	V	Q	L	E	Q	L	L	A	L	S	S	P	I	Y	R	L	E	L	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	R	L	F	A
Query Conservation																													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	G	D	T	G	A	G	D	A	V	K	I	V	N	N	L	L	L	G	C	N	M	A	S	L	A	E	A	L	V	L	G	V	K	C	G	L	K	P	E	T	M	Q	E	I	I	G	K	S	S	G	R	S	Y	A	M	E	A	K	M	E	K	F	I	M	S	G	D	F	A	G	G	F	A	M	D	L	Q	H
Template Known Secondary structure					S	T	T																														T	T												T	S	T	T															T				S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		Q	D	P	Q	L	Y	A	D	I	I	M	S	S	E	R	N	L	A	L	I	K	R	Y	Y	K	R	F	G	E	A	I	E	L	.	L	E	Q	G	D	K	Q	A	F	I	D	S	F	R	K
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		K	D	L	G	L	A	L	E	A	G	K	E	G	N	V	P	L	P	M	T	A	M	A	T	Q	I	F	E	G	G	R	A	M	G	L	G	R	E	D	M	S	A	V	I	K	V	W	E	Q
Template Known Secondary structure															T																			T	T		T	T	S	B	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions