Job Description P07023 Confidence 99.59% Date Thu Jan 5 11:00:05 GMT 2012 Rank 31 Aligned Residues 245 % Identity 17% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.														.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		L	C	P	S	L	R	P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	A	D	A	G	M	V	I	V	S	V	P	.	.	.	.	I	H	V	T	E
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence														.																											.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation														.
Template Sequence		I	T	P	T	D	K	K	I	G	F	L	G	.	L	G	L	M	G	S	G	I	V	S	N	L	L	K	M	G	H	T	V	T	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	E	G	A	R	L	G	R	T	P	A	E	V	V	S	T	C	D	I	T	F	A	C	V	S	D	P	K	A	A	K	D	L	V
Template Known Secondary structure						S	S							.		S													T	T								S	S	G	G	G	G						T	T					S										S							S	S
Template Predicted Secondary structure														.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		157	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure										.																										.	.
Query SS confidence										.																										.	.
Query Sequence		Q	V	I	G	K	L	P	P	.	L	P	K	D	C	I	L	V	D	L	A	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	.	.	D	G	P	V	L	G	L	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I	Q	V	W
Query Conservation										.																										.	.
Alig confidence										.																										.	.																											.
Template Conservation																																																																.
Template Sequence		L	G	P	S	G	V	L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	F	L	E	A	P	V	S	G	N	Q	Q	L	S	N	D	G	M	L	V	I	L	A	.	A	G	D	R	G	L	Y	E	D	C	S	S	C	F	Q	A	M
Template Known Secondary structure			S	T	T		G	G	G	G			T	T							S																	T	T										S								T							.										T
Template Predicted Secondary structure																																																																.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		G	A	R	L	H	R	I	S	A	V	E	H	D	Q	N	M	A	F	I	Q	A	L	R	H	F	A	T	F	A	Y	G	.	.	.	.	L	H	L	A	E	E	N	V	Q	L	E	Q	L	L	A	L	S	S	P	I	Y	R	L	E	L	A	M	V	G	R	L	F	A	Q	D	P	Q	L	Y	A	D	I	I	M	S
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.																								.	.	.	.					.	.	.	.
Template Conservation																																																												.	.	.	.					.	.	.	.
Template Sequence		G	K	T	S	F	F	L	G	E	V	G	N	A	A	K	M	M	L	I	V	N	M	V	Q	G	S	F	M	A	T	I	A	E	G	L	T	L	A	Q	V	T	G	Q	S	Q	Q	T	L	L	D	I	L	N	Q	G	Q	L	A	.	.	.	.	S	I	F	L	.	.	.	.	D	Q	K	C	Q	N	I	L	Q	G
Template Known Secondary structure									S	S	T	T																														T	T													S	T	T		.	.	.	.					.	.	.	.										T
Template Predicted Secondary structure																																																												.	.	.	.					.	.	.	.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.					.	480	.	.					.	.	.	.	.	.	.	490	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		S	E	R	N	L	A	L	I	K	R	Y	Y	K	R	F	G	E	A	I	E	L	L	E	Q	G	D	K	.	.	.	.	.	Q	A	F	I	D	S	F	R	K	V	E	H
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.
Template Conservation
Template Sequence		N	F	K	P	D	F	Y	L	K	Y	I	Q	K	D	L	R	L	A	I	A	L	G	D	A	V	N	H	P	T	P	M	A	A	A	A	N	E	V	Y	K	R	A	K	A
Template Known Secondary structure						S	S	B																		T	T
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions