Job Description P07023 Confidence 99.49% Date Thu Jan 5 11:00:05 GMT 2012 Rank 50 Aligned Residues 243 % Identity 14% Template c2p4qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1; PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae Resolution 2.37 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																			.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.		.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.									.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.									.
Query Sequence		P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	A	D	A	G	.	.	.	M	V	I	V	S	V	P	I	.	H	V	T	E	Q
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.									.
Alig confidence								.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.									.
Template Conservation								.
Template Sequence		D	F	G	L	I	G	.	L	A	V	M	G	Q	N	L	I	L	N	A	A	D	H	G	F	T	V	C	A	Y	N	R	T	Q	S	K	V	D	H	F	L	A	N	E	A	K	G	K	S	I	I	G	A	T	S	I	E	D	F	I	S	K	L	K	R	P	R	K	V	M	L	L	V	K	A	G	A	P	V	D	A
Template Known Secondary structure		S						.		S													T	T								S	S	S									T	T	T	T	T	S	S					S	S							T	S		S	S									S	S
Template Predicted Secondary structure								.
Template SS confidence
		4	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		158	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure									.																										.	.	.
Query SS confidence									.																										.	.	.
Query Sequence		V	I	G	K	L	P	P	.	L	P	K	D	C	I	L	V	D	L	A	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	.	.	.	D	G	P	V	L	G	L	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I	Q	V	W
Query Conservation									.																										.	.	.
Alig confidence									.																										.	.	.								.													.	.
Template Conservation																																													.													.	.
Template Sequence		L	I	N	Q	I	V	P	L	L	E	K	G	D	I	I	I	D	G	G	N	S	H	F	P	D	S	N	R	R	Y	E	E	L	K	K	K	G	I	L	F	V	G	S	.	G	V	S	G	G	E	E	G	A	R	Y	G	.	.	P	S	L	M	P	G	G	S	E	E	A	W	P	H	I	K	N	I	F	Q	S	I
Template Known Secondary structure							G	G	G			T	T							S																	T	T							.				S									.	.									G	G	G
Template Predicted Secondary structure																																													.													.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		234	.	.							.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																	.																	.	.	.	.													.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																	.																	.	.	.	.													.	.	.	.	.
Query Sequence		G	A	R	.	.	.	.	.	.	L	H	R	I	S	A	V	E	H	D	Q	N	M	A	F	I	.	Q	A	L	R	H	F	A	T	F	A	Y	G	L	H	L	A	.	.	.	.	E	E	N	V	Q	L	E	Q	L	L	A	L	.	.	.	.	.	S	S	P	I	Y	R	L	E	L	A	M	V	G	R	L	F	A
Query Conservation					.	.	.	.	.	.																	.																	.	.	.	.													.	.	.	.	.
Alig confidence					.	.	.	.	.	.																	.																	.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		S	A	K	S	D	G	E	P	C	C	E	W	V	G	P	A	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q	L	I	C	E	A	Y	D	I	M	K	R	L	G	G	F	T	D	K	E	I	S	D	V	F	A	K	W	N	N	G	V	L	D	S	F	L	V	E	I	T	R	D	I	L	K
Template Known Secondary structure		S				T	T			S							T	T																														T	T																T	T	T	T		B											T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		298	.																				300	.	.	.	.	.	.	.	.	.	310						.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.													.	.	.	.	.	.	.	340
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.				.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.				.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	Y	A	D	I	I	M	S	S	.	.	.	.	.	E	R	N	.	L	A	L	I	K	R	Y	Y	K	R	F	G	E	A	I	E	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	D	K	Q	A	F	I
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.				.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.				.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	D	V	D	G	K	P	L	V	E	K	I	M	D	T	A	G	Q	K	G	T	G	K	W	T	A	I	N	A	L	D	L	G	M	P	V	T	L	I	G	E	A	V	F	A	R	C	L	S	A	L	K	N	E	R	I	R	A	S	K	V	L	P	G	P	E	V	P	K	D	A	V	K	D	R	E	Q	F	V
Template Known Secondary structure			B		T	T	S	S	B	G	G	G	G	S								S													T																																				T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		341	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	F	R	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	L	E	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions