Job Description P07023 Confidence 97.67% Date Thu Jan 5 11:00:05 GMT 2012 Rank 246 Aligned Residues 130 % Identity 18% Template c2dt5A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8 Resolution 2.16 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.																.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	L	E	L	V	A	E	V	G	E	V	K	S	R	F	G	L	P	I	Y	V	P	E	R	E	A	S	M	L	A	S	R	R	A	E	A	E	A	L	G	V	P	P	D	L	I	E	D	V	L	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	R	E	S	Y	S	S	E	N	D	K
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.
Template Sequence		S	R	L	I	T	Y	L	R	I	L	E	E	L	E	A	Q	G	V	H	R	T	.	.	.	.	.	.	.	.	.	.	S	S	E	Q	L	G	G	L	A	Q	V	T	A	F	Q	V	R	K	D	L	S	Y	F	G	S	Y	G	T	R	G	V	G	Y	T	V	P	V	L	K	R	E	L	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T					.	.	.	.	.	.	.	.	.	.										T	S												T	T					T	T	T												.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.											30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.		.	.	.	130	.	.															.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																															.									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																															.									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		G	F	K	T	L	C	P	S	L	R	P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	.	T	L	S	G	Y	Q	V	R	.	I	L	E	Q	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	.	A	D	A	G	M	V	I	V	S	V	P	I
Query Conservation																															.									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																		.													.									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																		.
Template Sequence		R	H	I	L	G	L	N	R	K	W	G	L	C	I	V	G	.	M	G	R	L	G	S	A	L	A	D	Y	P	G	F	G	E	S	F	E	L	R	G	F	F	D	V	D	P	E	K	V	G	R	P	V	R	G	G	V	I	E	H	V	D	L	L	P	Q	R	V	P	G	R	I	E	I	A	L	L	T	V	P	R
Template Known Secondary structure						T	T	T	S									.		S										S				S	S									S		T	T	T	T	T				T	T						G	G	G					S	T	T	T								S
Template Predicted Secondary structure																		.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	T	E	Q	V	I	G	K	L	P	P	L	P	K	D	C	I	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	Q	K	A	A	D	L	L	V	A	A	G	I	K	G	I	L	N
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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