Job Description P07023 Confidence 97.36% Date Thu Jan 5 11:00:05 GMT 2012 Rank 323 Aligned Residues 120 % Identity 18% Template c1j6uA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution Resolution 2.30 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	V	V	I	V	G	G	G	G	Q	M	G	R	L	.	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	W	D	R	A	A	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	D	A	G	M	V	I	V	S	V	P	I	H	V	T	E	Q	V	I	G	K	L
Query Conservation																	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.								.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		X	K	I	H	F	V	G	.	I	G	G	I	G	X	S	A	V	A	L	H	E	F	S	N	G	N	D	V	Y	G	S	N	I	E	E	T	E	R	T	A	Y	L	R	K	L	G	I	P	I	F	V	P	H	S	A	D	N	W	Y	D	P	D	L	V	I	K	T	P	A	V	R	D	D	N	P	E	I	V	R	A
Template Known Secondary structure								T	.	T	T	S													T	T								S	S											T	T					S	S			T	T	S					S						T	T			T	T
Template Predicted Secondary structure									.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170																	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.															.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.															.	.	.
Query Sequence		P	P	L	P	K	D	C	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	D	L	A	S	V	K	.	.	.	.	.	N	G	P	L	Q	A	M	L	V	A	H	D	G	P	.	.	.	V	L	G	L	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	G	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.															.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		R	X	E	R	V	P	I	E	N	R	L	H	Y	F	R	D	T	L	K	R	E	K	K	E	E	F	A	V	T	G	T	D	G	K	T	T	T	T	A	X	V	A	H	V	L	K	H	L	R	K	S	P	T	V	F	L	G	G	I	X	D	S	L	E	H	G	N	Y	E	K	G	N	G	P	V	V	Y	E	L	D
Template Known Secondary structure				T	T																											S	S	S															T	T								S	S			T	T	S	T	T	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		219
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions