Job Description P07023 Confidence 98.72% Date Thu Jan 5 11:00:05 GMT 2012 Rank 127 Aligned Residues 160 % Identity 18% Template c1gdhA_ PDB info PDB header:oxidoreductase(choh (d)-nad(p)+ (a)) Chain: A: PDB Molecule:d-glycerate dehydrogenase; PDBTitle: crystal structure of a nad-dependent d-glycerate2 dehydrogenase at 2.4 angstroms resolution Resolution 2.40 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.															.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		P	D	L	I	E	D	V	L	R	R	V	M	R	E	S	Y	S	S	E	N	D	K	G	F	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	P	S	L	R	P	V	V	I	V	G	G	G	G	Q	M	G	R	L	F	E	K	M	L	T	L	S	G	Y	Q	V	R	I	L	E	Q	H	D	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																											.
Template Conservation																																																						.
Template Sequence		V	A	T	A	E	I	A	M	L	L	L	L	G	S	A	R	R	A	G	E	G	E	K	M	I	R	T	R	S	W	P	G	W	E	P	L	E	L	V	G	E	K	L	D	N	K	T	L	G	I	Y	G	.	F	G	S	I	G	Q	A	L	A	K	R	A	Q	G	F	D	M	D	I	D	Y	F	D	T	H	R	A
Template Known Secondary structure																	T	T										T	T							T	T	T	T						T	T								.		S												T	T	T								S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
														133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																						.									.	.															.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.									.	.															.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	W	D	R	A	A	D	I	V	A	D	A	G	M	V	I	V	S	V	P	I	H	.	V	T	E	Q	V	I	G	K	.	.	L	P	P	L	P	K	D	C	I	L	V	D	L	A	.	.	.	S	V	K	N	G	P	L	Q	A	M	L	V	A	H	D	G	P	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																						.									.	.															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.									.	.															.	.	.
Template Conservation
Template Sequence		S	S	S	D	E	A	S	Y	Q	A	T	F	H	D	S	L	D	S	L	L	S	V	S	Q	F	F	S	L	N	A	P	S	T	P	E	T	R	Y	F	F	N	K	A	T	I	K	S	L	P	Q	G	A	I	V	V	N	T	A	R	G	D	L	V	D	N	E	L	V	V	A	A	L	E	A	G	R	L	A	Y	A
Template Known Secondary structure										T					S	S									S										T	T	T	T	T		B	S					T	T	S		T	T							S		G	G	G	B												T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		195	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure				.	.	.	.	.																					.	.	.
Query SS confidence				.	.	.	.	.																					.	.	.
Query Sequence		G	L	.	.	.	.	.	H	P	M	F	G	P	D	S	G	S	L	A	K	Q	V	V	V	W	C	D	.	.	.	G	R	K	P	E	A	Y	Q	W	F	L	E	Q	I
Query Conservation				.	.	.	.	.																					.	.	.
Alig confidence				.	.	.	.	.			.	.																	.	.	.
Template Conservation											.	.
Template Sequence		G	F	D	V	F	A	G	E	P	.	.	N	I	N	E	G	Y	Y	D	L	P	N	T	F	L	F	P	H	I	G	S	A	A	T	Q	A	R	E	D	M	A	H	Q	A
Template Known Secondary structure				S			T	T	T	T	.	.	S			T	T	G	G	G		T	T					S	S		T	T		S
Template Predicted Secondary structure											.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions