Job Description P77324 Confidence 100.00% Date Thu Jan 5 12:27:44 GMT 2012 Rank 2 Aligned Residues 271 % Identity 26% Template c3hrdC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		M	K	A	F	T	Y	E	R	V	N	T	P	A	E	A	A	L	S	A	Q	R	V	P	G	A	.	.	K	F	I	A	G	G	T	N	L	L	D	L	M	K	L	E	I	E	T	P	T	H	L	I	D	V	N	G	L	G	L	D	K	I	E	V	T	D	A	G	G	L	R	I	G	A	L	V	R	N	T	D	L
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		M	K	D	F	E	F	F	A	P	K	T	L	E	E	A	K	G	L	L	H	Q	Y	K	D	V	P	P	A	I	I	A	G	G	T	D	L	V	I	E	I	N	D	R	W	E	K	P	D	V	V	I	D	I	K	K	L	K	E	L	E	Y	I	R	V	E	E	N	T	I	H	I	G	A	L	S	T	F	T	Q	I
Template Known Secondary structure											S	S											T	T	T	S						S	S		T	T							T	T	S				S						T	T		G	G	G							S	S						T	T		B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	H	E	R	V	R	R	D	Y	A	V	L	S	R	A	L	L	A	G	A	S	G	Q	L	R	N	Q	A	T	T	A	G	N	L	L	Q	R	T	R	C	P	Y	F	Y	D	T	N	Q	P	C	N	K	R	L	P	G	S	G	C	A	A	L	E	G	F	S	R	Q	H	A	V	V	G	V	S	E	A	C	I
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	H	P	F	I	R	S	H	V	R	A	L	Y	K	A	A	S	Q	V	G	S	P	Q	I	R	N	L	G	T	I	G	G	N	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Known Secondary structure																				T	S	S									B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																																												.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	T	H	P	S	D	M	A	V	A	M	R	L	L	D	A	V	V	E	T	I	T	P	E	G	K	T	R	S	I	T	L	A	D	F	Y	H	P	P	G	K	T	P	H	I	E	T	A	L	L	P	G	E	L	I	V	A	V	T	L	P	P	P	L	G	G	.	K	H	I	Y	R	K	V	R	D	R	A	S	Y
Query Conservation																																																																				.
Alig confidence																											.																.	.																								.
Template Conservation																											.																.	.
Template Sequence		S	S	V	A	G	D	G	V	S	A	M	T	T	L	D	A	T	V	V	L	E	S	V	R	G	.	T	R	Q	M	K	L	T	D	F	F	D	G	E	G	F	.	.	K	R	R	N	A	L	E	A	D	E	I	M	T	E	V	I	I	D	R	P	D	A	H	S	A	S	A	F	Y	K	L	A	K	R	K	S	L
Template Known Secondary structure		T		T	T										T	T								T	T		.														S	S	.	.	S	S	S	S	S			T	T													T	T										S	S	S	S	S
Template Predicted Secondary structure																											.																.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.											.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	A	L	V	S	V	A	A	I	I	Q	P	D	G	.	.	.	.	.	S	G	R	V	A	L	G	G	V	A	H	K	P	W	R	I	E	A	A	D	A	Q	L	S	Q	.	.	.	.	.	.	.	.	.	.	G	A	Q	A	V	Y	D	T	L	F	A	S	A	H	P	T	A	E	N	T	F	K	L	L	L
Query Conservation																	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	S	V	I	G	G	G	M	A	V	K	V	D	D	A	G	V	C	T	W	A	S	M	R	G	G	C	I	G	R	Y	P	L	H	F	K	Q	A	E	E	M	L	V	G	A	P	L	T	M	E	T	M	E	A	T	L	P	I	L	H	D	T	V	Y	D	M	A	R	A	R	P	S	V	L	Y	K	K	E	S
Template Known Secondary structure					S											T	T	T											T	S	S	S	S												T	T	S	B								T	T												T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	T	L	A	S	V	L	A	E	A	R	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	G	V	F	K	K	L	F	V	D	I	L	D	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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