Job Description P77324 Confidence 100.00% Date Thu Jan 5 12:27:44 GMT 2012 Rank 3 Aligned Residues 269 % Identity 28% Template c1n62C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Resolution 1.09 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																				.
Query SS confidence				.	.																				.
Query Sequence		M	K	.	.	A	F	T	Y	E	R	V	N	T	P	A	E	A	A	L	S	A	Q	R	.	V	P	G	A	K	F	I	A	G	G	T	N	L	L	D	L	M	K	L	E	I	E	T	P	T	H	L	I	D	V	N	G	L	G	L	D	K	I	E	V	T	D	A	G	G	L	R	I	G	A	L	V	R	N	T	D
Query Conservation				.	.																				.
Alig confidence				.	.																				.
Template Conservation
Template Sequence		M	I	P	G	S	F	D	Y	H	R	P	K	S	I	A	D	A	V	A	L	L	T	K	L	G	E	D	A	R	P	L	A	G	G	H	S	L	I	P	I	M	K	T	R	L	A	T	P	E	H	L	V	D	L	R	D	I	G	D	L	V	G	I	R	E	E	G	T	D	V	V	I	G	A	M	T	T	Q	H	A
Template Known Secondary structure													S	S												G	G	G					S	S		T	T							T	T	S				S						T	T		G	G	G	S						T	T						T	T		B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	H	E	R	V	R	R	D	Y	A	V	L	S	R	A	L	L	A	G	A	S	G	Q	L	R	N	Q	A	T	T	A	G	N	L	L	Q	R	T	R	C	P	Y	F	Y	D	T	N	Q	P	C	N	K	R	L	P	G	S	G	C	A	A	L	E	G	F	S	R	Q	H	A	V	V	G	V	S	E	A	C
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	G	S	D	F	L	A	A	K	L	P	I	I	R	E	T	S	L	L	I	A	D	P	Q	I	R	Y	M	G	T	I	G	G	N	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																				T	T	S	S									B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	H	P	S	D	M	A	V	A	M	R	L	L	D	A	V	V	E	T	I	T	P	E	G	K	T	R	S	I	T	L	A	D	F	Y	H	P	P	G	K	T	P	H	I	E	T	A	L	L	P	G	E	L	I	V	A	V	T	L	P	P	P	L	G	G	K	H	I	Y	R	K	V	R	D	R	A	S	Y
Query Conservation
Alig confidence																												.													.	.	.	.	.
Template Conservation																												.													.	.	.	.	.
Template Sequence		N	G	D	P	G	N	D	M	P	A	L	M	Q	C	L	G	A	A	Y	E	L	T	G	P	E	G	.	A	R	I	V	A	A	R	D	Y	Y	Q	G	.	.	.	.	.	A	Y	F	T	A	I	E	P	G	E	L	L	T	A	I	R	I	P	V	P	P	T	G	H	G	Y	A	Y	E	K	L	K	R	K	I	G
Template Known Secondary structure		S			T	T		S									T								T	T		.													.	.	.	.	.	T	T			S			T	T													T	T										S	S	T	T
Template Predicted Secondary structure																												.													.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.					.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.											.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	A	L	V	S	V	A	A	I	I	Q	P	D	G	.	.	.	.	S	G	R	V	A	L	G	G	V	A	H	K	P	W	R	I	E	A	A	D	A	Q	L	S	Q	.	.	.	.	.	.	.	.	.	.	G	A	Q	A	V	Y	D	T	L	F	A	S	A	H	P	T	A	E	N	T	F	K	L	L	L	A
Query Conservation																	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Y	A	T	A	A	A	A	V	V	L	T	M	S	G	G	K	C	V	T	A	S	I	G	L	T	N	V	A	N	T	P	L	W	A	E	E	A	G	K	V	L	V	G	T	A	L	D	K	P	A	L	D	K	A	V	A	L	A	E	A	I	T	A	P	A	S	D	G	R	G	P	A	E	Y	R	T	K	M	A
Template Known Secondary structure					S											T	T											S	S	S	S	S												T	T	S																							B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	T	L	A	S	V	L	A	E	A	R	A	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	M	L	R	R	A	V	E	R	A	K	A	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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