Job Description P76251 Confidence 98.95% Date Thu Jan 5 12:21:15 GMT 2012 Rank 30 Aligned Residues 265 % Identity 16% Template d1ptma_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like PdxA-like Resolution 1.96

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Query SS confidence														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Query Sequence		M	K	T	M	R	I	A	A	I	P	G	D	.	.	G	I	G	K	E	V	L	P	E	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	.	.	.	.	.	.	.	.
Query Conservation														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Alig confidence														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	T	Q	R	V	V	I	T	P	G	E	P	A	G	I	G	P	D	L	V	V	Q	L	A	Q	R	E	W	P	V	E	L	V	V	C	A	D	A	T	L	L	T	N	R	A	A	X	L	G	L	P	L	T	L	R	P	Y	S	P	N	S	P	A	Q	P	Q	T	A	G	T	L	T	L	L	P	V	A	L	R
Template Known Secondary structure													S	T	T	S	S									T	T	S			S	S																		T	T										T	T	S							T	T										S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																				58	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	D	D	W	H	E	Q	L	S	.	.	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	V	T	A	G	Q	L	A	V	E	N	G	H	Y	V	V	E	T	L	A	R	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	H	K	G	V	I	N	D	A	G	I	P	F	T	G	H	T	E	F	F	E	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	A	K	K
Template Known Secondary structure		S			B	T	T	B			T	T																			T	S		S															T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.														.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																																		.	.	.										.	.	.	.
Query SS confidence																																																																		.	.	.										.	.	.	.
Query Sequence		P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	.	.	.	P	R	K	T	L	T	S	A	T	.	.	.	.
Query Conservation																																																																		.	.	.										.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.																				.	.	.										.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.
Template Sequence		V	V	.	.	.	.	.	.	.	.	.	X	X	L	A	T	E	E	L	R	V	A	L	A	.	T	T	H	L	P	L	R	D	I	A	D	A	I	.	.	.	.	.	.	.	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H
Template Known Secondary structure				.	.	.	.	.	.	.	.	.					S	S	S						S	.	S		S	S		G	G	G						.	.	.	.	.	.	.																			T	T			S	S								S	S	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.
Template SS confidence
		149	150										.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
								191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.						.	.	.																			.																.	.									.	.	.	.	.	.
Template Conservation													.	.	.																			.																.	.									.	.	.	.	.	.
Template Sequence		A	G	E	G	G	H	X	G	T	E	E	.	.	.	I	D	T	I	I	P	V	L	N	E	L	R	A	Q	G	X	K	L	.	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	L	.	.	D	N	A	D	A	V	L	A	.	.	.	.	.	.	X	Y	H	D	Q	G	L	P	V	L	K	Y	Q	G	F	G
Template Known Secondary structure		G	G	G	G	G	T	T		S			.	.	.			T											T	T				.										S	S					.	.	T	T		S					.	.	.	.	.	.	S	S										T	T		S	S
Template Predicted Secondary structure													.	.	.																			.																.	.									.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.							.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		R	G	V	N	I	T	L	G	L	.	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K
Template Known Secondary structure		S							S	S	.	S	S						S	S				G	G	G	T	T	S	S
Template Predicted Secondary structure											.
Template SS confidence
		280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions