Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 25 Aligned Residues 347 % Identity 16% Template c3us8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of an isocitrate dehydrogenase from sinorhizobium2 meliloti 1021 Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	K	T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P
Query Conservation
Alig confidence						.	.																									.	.	.	.												.
Template Conservation						.	.																									.	.	.	.												.
Template Sequence		V	A	N	P	.	.	V	V	E	L	D	G	D	E	X	T	R	I	I	W	Q	F	I	K	D	K	L	I	H	P	.	.	.	.	Y	L	D	L	D	L	E	Y	Y	D	L	.	G	V	E	N	R	D	A	T	D	D	Q	V	T	I	D	A	A	N	A	I	K	K	H	G	V	G	V	K	C	A	T	I	T	P
Template Known Secondary structure				S		.	.																						T	T	T	.	.	.	.	T											.								T	T	T														S
Template Predicted Secondary structure						.	.																									.	.	.	.												.
Template SS confidence
		6	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure						.	.	.	.	.																																																																					.	.	.
Query SS confidence						.	.	.	.	.																																																																					.	.	.
Query Sequence		D	T	V	P	.	.	.	.	.	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	.	.	.
Query Conservation						.	.	.	.	.																																																																					.	.	.
Alig confidence						.	.	.	.	.																											.												.	.	.																												.	.	.
Template Conservation																																					.												.	.	.
Template Sequence		D	E	G	R	V	E	E	F	K	L	K	K	X	W	K	S	P	N	G	T	I	R	N	I	L	G	G	V	I	F	R	E	P	I	I	.	C	K	N	V	P	R	L	V	P	G	W	.	.	.	T	K	P	I	I	V	G	R	H	A	F	G	D	Q	Y	R	A	T	D	F	K	F	P	G	K	G	K	L	S	I
Template Known Secondary structure										T		S	S															S									.		T	T	S			S	S	T	T		.	.	.		S									S	S	G	G	G	G								S	S
Template Predicted Secondary structure																																					.												.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
																				153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																												.	.
Template Conservation																																																				.
Template Sequence		K	F	V	G	E	D	G	Q	T	I	E	H	D	V	Y	D	A	P	G	A	G	V	A	L	A	X	Y	N	L	D	E	S	I	T	E	F	A	R	A	S	F	N	Y	G	L	Q	R	K	V	P	.	V	Y	L	S	T	K	N	T	I	L	K	A	Y	D	G	R	F	K	D	I	F	Q	K	V	F	D	E	E	F
Template Known Secondary structure						T	T	S											S	S																													T			.							T	T	T	S	T	T																	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
							213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																										.																																						.
Template Conservation																																.																																						.
Template Sequence		A	A	Q	F	K	A	E	K	L	W	Y	E	H	R	L	I	D	D	X	V	A	S	A	L	K	W	S	G	G	Y	.	V	W	A	C	K	N	Y	D	G	D	V	Q	S	D	I	V	A	Q	G	F	G	S	L	G	L	X	T	S	V	L	X	T	P	D	G	K	T	.	V	E	A	E	A	A	H	G	T	V	T
Template Known Secondary structure								T	T																		S					.																					S		T	T	S								T	T	S			.							S
Template Predicted Secondary structure																																.																																						.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.
		288	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.								.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure										.	.	.	.	.	.																			.	.																														.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.																			.	.																														.	.	.	.	.	.	.
Query Sequence		D	I	Y	G	K	N	I	A	.	.	.	.	.	.	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	.	.	G	D	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	.	.	.	.	.	.	.	K	G	N	A	T	T	P	Q	V	A
Query Conservation										.	.	.	.	.	.																			.	.																														.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																			.	.																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	H	Y	R	Q	H	Q	K	G	E	E	T	S	T	N	S	I	A	S	I	F	A	W	T	R	G	L	A	H	R	A	K	L	D	G	N	A	E	L	A	K	F	S	E	T	L	E	R	V	C	V	D	T	V	E	S	G	F	X	T	K	D	L	A	L	L	I	G	P	D	Q	P	W	L	S	T	T	G	F	L
Template Known Secondary structure									T	T																										T																					T	T			B									T	T				B
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		353	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	I	C	K	I	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	I	D	E	N	L	R	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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