Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 15 Aligned Residues 338 % Identity 40% Template c3u1hA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	.	.	V
Query Conservation																																																																															.	.
Alig confidence																																										.																																					.	.
Template Conservation																																										.
Template Sequence		K	I	A	V	L	P	G	D	G	I	G	P	E	V	M	E	A	A	I	E	V	L	K	A	V	A	E	R	F	G	H	E	F	E	F	E	Y	G	L	I	.	G	G	A	A	I	D	E	A	G	T	P	L	P	E	E	T	L	D	V	C	R	G	S	D	A	I	L	L	G	A	V	G	G	P	K	W	D	Q	N
Template Known Secondary structure									S	T	T																				S											.	T						S	S	S	S	S	S										T	S	S										S	T	T	T	S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	.	.	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	H	E	V	V	I	Q	E	S	V
Query Conservation																																		.	.
Alig confidence																																		.	.																														.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.
Template Sequence		P	S	E	L	R	P	E	K	G	L	L	G	I	R	K	G	L	D	L	F	A	N	L	R	P	V	K	V	Y	D	S	L	A	D	A	S	P	L	K	K	E	V	I	E	G	V	D	L	V	I	V	R	E	L	T	G	G	L	Y	F	E	E	G	.	.	.	.	.	.	.	.	E	E	A	A	V	D	T	L	L
Template Known Secondary structure				S	S	S	S	S										T	T												G	G	G	T	T	S	S	S	S						S	S										S	S	B	S				T	T	.	.	.	.	.	.	.	.		S							B
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V
Query Conservation
Alig confidence																						.															.
Template Conservation																						.															.
Template Sequence		Y	T	R	E	E	I	E	R	I	I	R	K	A	F	E	L	A	L	T	R	.	K	K	K	V	T	S	V	D	K	A	N	V	L	E	.	S	S	R	L	W	R	E	V	A	E	E	V	A	K	E	Y	P	D	V	E	L	E	H	M	L	V	D	N	A	A	M	Q	L	I	R	N	P	R	Q	F	D	V	I	V
Template Known Secondary structure																				T	T	.	T	S								T	T	T			.														T	T		T	T	S																		G	G	G		S
Template Predicted Secondary structure																						.															.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	.	L	G	N	G	D	E	R	F	Q	Q
Query Conservation																																																																							.
Alig confidence																																		.	.																																				.			.	.	.	.	.
Template Conservation																																		.	.																																							.	.	.	.	.
Template Sequence		T	E	N	M	F	G	D	I	L	S	D	E	A	S	M	I	T	G	S	L	G	M	L	P	S	A	S	L	S	T	D	G	.	.	L	G	L	Y	E	P	V	H	G	S	A	P	D	I	A	G	K	G	I	A	N	P	L	A	T	I	L	S	A	A	M	M	L	R	Y	S	F	G	.	.	.	.	.	L	E	E
Template Known Secondary structure																			S		T	T	T								T	T	S	.	.							S	S				T	T	T	T	T	S	S		S		T																	.	.	.	.	.
Template Predicted Secondary structure																																		.	.																																							.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	.	.	.	.	K	G	N	A	T	T	P	Q	V	A	D	A	I	C	K	I	I	L	R
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.
Template Conservation
Template Sequence		E	A	K	A	I	E	K	A	V	E	K	V	L	A	E	G	Y	R	T	A	D	I	A	K	P	G	G	K	Y	V	S	T	T	E	M	T	D	E	V	K	A	A	V	V	D
Template Known Secondary structure																	T			B	T	T	T	S		S	S				B
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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