Return to main results Retrieve Phyre Job Id

Job DescriptionP76251
Confidence100.00%DateThu Jan 5 12:21:15 GMT 2012
Rank1Aligned Residues358
% Identity78%Templatec3fmxX_
PDB info PDB header:oxidoreductaseChain: X: PDB Molecule:tartrate dehydrogenase/decarboxylase; PDBTitle: crystal structure of tartrate dehydrogenase from pseudomonas2 putida complexed with nadh
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  TMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQMEWASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTV
Query Conservation     
 










      

                   
       
  

  
       
  
 
 

 
   
Alig confidence 















































































Template Conservation 
  
 

 







      

 
        

       
       
  

  
   

     
 



 
   
Template Sequence  SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKV
Template Known Secondary structure 
STST



B
S
SSSSSS
TTTTSS

BTTTB
Template Predicted Secondary structure 































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  PDHISLWGSLLKFRREFDQYVNLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQESVFT
Query Conservation         
    

  








    

   
        











 
 
           
 
      
Alig confidence 















































































Template Conservation         
    

  








    

  


       

 








 
 
             
      
Template Sequence  PDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFT
Template Known Secondary structure 
TTTT





TT


SSSS

TT


SSBT



STTSTT


B

Template Predicted Secondary structure 
















































Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  RRGVDRILRYAFELAQSRPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRWDKQHIDILCARFVMQPERFDVVVAS
Query Conservation 
   




 

  
    

 

 
 





  



     


 


 
      

     

  
  




  
Alig confidence 















































































Template Conservation      


 
 

  
    

 

 
 





   


     


 


 
      


    

  
  





 
Template Sequence  RRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVAS
Template Known Secondary structure  TTSSTTTTSSS

TTTSSSTT
TTS
TTS
S
Template Predicted Secondary structure 


















Template SS confidence 















































































   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  NLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHN
Query Conservation 

 





 

 
 




 

 


      
 


 









 



 
 


 



  

         
 
Alig confidence 















































































Template Conservation 









 
 
 




 





      
 


 









 



 
 


 



  

        

 
Template Sequence  NLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHD
Template Known Secondary structure  TTTTTTTTTTTT
GGG

TT
SS
SS


GGGTTS





S
Template Predicted Secondary structure 







































Template SS confidence 















































































   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   324.....330.........340.........350.........360.
Predicted Secondary structure 














Query SS confidence 





































Query Sequence  GILAAIEEVIAHGPKTPDMKGNATTPQVADAICKIILR
Query Conservation   
  

      
  
 



   
 
   

   
 
Alig confidence 





































Template Conservation   
  

   
  
  
 



   
 
   

   
  
Template Sequence  DMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLAR
Template Known Secondary structure  T


TTTT



Template Predicted Secondary structure 










Template SS confidence 





































   326...330.........340.........350.........360...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions