Phyre 2 alignment of P76251 with c3blxM

Job Description P76251
Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012

Rank 21 Aligned Residues 324

% Identity 31% Template c3blxM_

PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1; PDBTitle: yeast isocitrate dehydrogenase (apo form)

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	V
Query Conservation
Alig confidence																												.	.	.	.												.						.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.												.						.	.	.	.	.	.	.	.	.
Template Sequence	R	F	T	V	T	L	I	P	G	D	G	V	G	K	E	I	T	D	S	V	R	T	I	F	E	A	E	.	.	.	.	N	I	P	I	D	W	E	T	I	N	I	.	K	E	G	V	Y	.	.	.	.	.	.	.	.	.	E	A	V	E	S	L	K	R	N	K	I	G	L	K	G	L	W	H	T	P	A	D	Q
Template Known Secondary structure										S																		.	.	.	.	T		S									.						.	.	.	.	.	.	.	.	.																			S
Template Predicted Secondary structure																												.	.	.	.												.						.	.	.	.	.	.	.	.	.
Template SS confidence
	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.										60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	H	E	V	V	I	Q	E	S	V	F	T
Query Conservation
Alig confidence			.	.	.																														.	.	.	.	.																													.	.	.	.
Template Conservation			.	.	.																														.	.	.	.	.																													.	.	.	.
Template Sequence	T	G	.	.	.	H	G	S	L	N	V	A	L	R	K	Q	L	D	I	Y	A	N	V	A	L	F	K	S	L	K	G	V	K	T	.	.	.	.	.	R	I	P	D	I	D	L	I	V	I	R	E	N	T	E	G	E	F	S	G	L	E	H	E	S	V	P	G	.	.	.	.	V	V	E	S	L	K	V	M	T
Template Known Secondary structure		T	.	.	.											T	S													T	T				.	.	.	.	.	S	S		S										S	S	G	G	G	S								T	T	.	.	.	.
Template Predicted Secondary structure			.	.	.																														.	.	.	.	.																													.	.	.	.
Template SS confidence
	88	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	.	E	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence	R	P	K	T	E	R	I	A	R	F	A	F	D	F	A	K	K	Y	N	R	K	S	V	T	A	V	H	K	A	N	I	M	K	L	G	D	G	L	F	R	N	I	I	T	E	I	G	Q	K	E	Y	P	D	I	D	V	S	S	I	I	V	D	N	A	S	M	Q	A	V	A	K	P	H	Q	F	D	V	L	V	T
Template Known Secondary structure																		T	T										T	T	T	S	T	T																		T	T	S																		G	G	G		S
Template Predicted Secondary structure
Template SS confidence
	156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	.	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	E	R	F	Q	Q	A
Query Conservation																																								.
Alig confidence																																.	.	.						.																																.	.	.	.	.
Template Conservation																																.	.	.																																						.	.	.	.	.
Template Sequence	P	S	M	Y	G	T	I	L	G	N	I	G	A	A	L	I	G	G	P	G	L	V	A	G	A	N	F	G	R	D	Y	.	.	.	A	V	F	E	P	G	S	R	H	V	G	L	D	I	K	G	Q	N	V	A	N	P	T	A	M	I	L	S	S	T	L	M	L	N	H	L	G	.	.	.	.	.	L	N	E	Y
Template Known Secondary structure																	T		G	G	G								S	S		.	.	.						T	T	T	T	T	T						T	T																			T	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.																																						.	.	.	.	.
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	.	P	K	T	P	D	M	K	G	N	A	T	T	P	Q	V	A	D	A	I	C	K	I	I	L	R
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence	A	T	R	I	S	K	A	V	H	E	T	I	A	E	G	K	H	T	T	R	D	I	G	G	S	S	S	T	T	D	F	T	N	E	I	I	N	K	L	S	T
Template Known Secondary structure														S	S	S	S		B	G	G	G	T			B
Template Predicted Secondary structure
Template SS confidence
	308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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