Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 23 Aligned Residues 345 % Identity 20% Template c2uxqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase native; PDBTitle: isocitrate dehydrogenase from the psychrophilic bacterium2 desulfotalea psychrophila: biochemical properties and3 crystal structure analysis Resolution 1.75 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	.
Query Conservation																																																																																	.
Alig confidence																													.	.	.	.												.																																					.
Template Conservation																													.	.	.	.												.
Template Sequence		K	T	P	L	V	E	L	D	G	D	E	M	T	R	V	L	W	P	L	I	K	D	K	L	L	L	P	.	.	.	.	F	I	D	L	Q	T	E	Y	Y	D	L	.	G	I	E	E	R	D	R	T	N	D	Q	I	T	I	D	A	A	E	A	I	K	K	Y	G	V	G	V	K	N	A	T	I	T	P	N	Q	D
Template Known Secondary structure		S	S																							T	T	T	.	.	.	.	T	B										.	S							T	T	T														S
Template Predicted Secondary structure																													.	.	.	.												.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
						83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.	.	.																																																																						.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																																						.	.	.	.	.	.	.
Query Sequence		.	.	.	.	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	.	.	.	.	.	.	.
Query Conservation		.	.	.	.																																																																						.	.	.	.	.	.	.
Alig confidence		.	.	.	.																													.									.	.	.																														.	.	.	.	.	.	.
Template Conservation																																		.									.	.	.
Template Sequence		R	V	E	E	Y	G	L	K	E	Q	W	K	S	P	N	A	T	V	R	A	M	L	D	G	T	V	F	R	K	P	I	M	.	V	K	N	I	K	P	S	V	.	.	.	R	S	W	Q	K	P	I	V	V	G	R	H	A	Y	G	D	F	Y	K	N	A	E	I	F	A	E	A	G	G	K	L	E	I	V	V	T
Template Known Secondary structure							T		S	S																								.		T	T	B			S	S	.	.	.	T	T			S									S		G	G	G	G							T	T
Template Predicted Secondary structure																																		.									.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
																152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	.	E	N	Y	P	E	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																											.						.
Template Conservation																																																.
Template Sequence		D	K	N	G	K	E	T	R	Q	T	I	M	E	V	D	E	P	A	I	V	Q	G	I	H	N	T	V	A	S	I	G	H	F	A	R	A	C	F	E	Y	S	L	D	Q	K	I	.	D	C	W	F	A	T	K	D	T	I	S	K	Q	Y	D	Q	R	F	K	I	I	F	E	E	I	F	A	Q	E	Y	K	E	K
Template Known Secondary structure			T	T												S	S																													T		.								T	T	T		T	T																	T
Template Predicted Secondary structure																																																.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
							216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																							.																																				.	.
Template Conservation																													.																																				.	.
Template Sequence		F	A	A	A	G	I	E	Y	F	Y	T	L	I	D	D	V	V	A	R	M	M	K	T	E	G	G	M	.	L	W	A	C	K	N	Y	D	G	D	V	M	S	D	M	V	A	S	A	F	G	S	L	A	M	M	S	S	V	L	V	S	P	Y	G	.	.	Y	F	E	Y	E	A	A	H	G	T	V	Q	R	H	Y
Template Known Secondary structure						T																T	T					S	.																					T		T	T	S								T	T	S	.	.								S
Template Predicted Secondary structure																													.																																				.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		291	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.									.	.	.	350	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																					.	.																																.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																					.	.																																.	.	.	.	.	.	.	.
Query Sequence		G	K	N	I	A	.	.	.	.	.	.	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	.	.	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	K	G	N	A	.	.	.	.	.	.	.	.	T	T	P	Q	V	A	D	A
Query Conservation							.	.	.	.	.	.																					.	.																																.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																					.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	H	L	K	G	E	R	T	S	T	N	P	V	A	L	I	Y	A	W	T	G	A	L	R	K	R	G	E	L	D	G	T	P	D	L	C	A	F	C	D	S	L	E	A	I	T	I	E	C	I	E	S	G	Y	M	T	G	D	L	A	R	I	C	E	P	A	A	I	K	V	L	D	S	I	E	F	I	D	E
Template Known Secondary structure						T	T																										T																					T	T								T	T	B	S	S			S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		355	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	K	I	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	K	R	L	Q	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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