Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 27 Aligned Residues 344 % Identity 19% Template c2qfyE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-2 dependent isocitrate dehydrogenase in complex with a-ketoglutarate Resolution 2.10 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																											.	.	.	.												.																																					.	.	.
Template Conservation																											.	.	.	.												.
Template Sequence		P	V	V	E	L	D	G	D	E	M	T	R	I	I	W	D	K	I	K	K	K	L	I	L	P	.	.	.	.	Y	L	D	V	D	L	K	Y	Y	D	L	.	S	V	E	S	R	D	A	T	S	D	K	I	T	Q	D	A	A	E	A	I	K	K	Y	G	V	G	I	K	C	A	T	I	T	P	D	E	A	R	V
Template Known Secondary structure																							T	T	T	T	.	.	.	.	T											.	S							T	T	T														S
Template Predicted Secondary structure																											.	.	.	.												.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
				83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																													.												.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.												.	.	.
Template Sequence		K	E	F	N	L	H	K	M	W	K	S	P	N	G	T	I	R	N	I	L	G	G	T	V	F	R	E	P	I	V	.	I	P	R	I	P	R	L	V	P	R	W	.	.	.	E	K	P	I	I	I	G	R	H	A	H	G	D	Q	Y	K	A	T	D	T	L	I	P	G	P	G	S	L	E	L	V	Y	K	P	S
Template Known Secondary structure				T	T		S	S															S									.		T	T	S			S	S	T	T		.	.	.		S									S	S	G	G	G	S								S	S										S
Template Predicted Secondary structure																																.												.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
															150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																														.	.	.	.	.
Template Conservation																																															.
Template Sequence		D	P	T	T	A	Q	P	Q	T	L	K	V	Y	D	Y	K	G	S	G	V	A	M	A	M	Y	N	T	D	E	S	I	E	G	F	A	H	S	S	F	K	L	A	I	D	K	.	K	L	N	L	F	L	S	T	K	N	T	I	L	K	K	Y	D	G	R	F	K	D	I	F	Q	E	V	Y	E	A	Q	Y	K	S
Template Known Secondary structure			T	T	T	S											S	S																												T	.	T									T	T	T	S	T	T																	T
Template Predicted Secondary structure																																															.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
				212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I
Query Conservation		.	.
Alig confidence		.	.																											.																																						.
Template Conservation																														.																																						.
Template Sequence		K	F	E	Q	L	G	I	H	Y	E	H	R	L	I	D	D	M	V	A	Q	M	I	K	S	K	G	G	F	.	I	M	A	L	K	N	Y	D	G	D	V	Q	S	D	I	V	A	Q	G	F	G	S	L	G	L	M	T	S	I	L	V	T	P	D	G	K	T	.	F	E	S	E	A	A	H	G	T	V	T	R	H
Template Known Secondary structure							T																		S					.																					T		T	T	S								T	T	S			.							S
Template Predicted Secondary structure																														.																																						.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.
		290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.										.	.	.	350	.
Predicted Secondary structure								.	.	.	.	.	.																					.	.																			.														.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.																					.	.																			.														.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	K	N	I	A	.	.	.	.	.	.	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	.	.	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	.	A	H	G	P	K	T	P	D	M	K	G	N	A	.	.	.	.	.	.	.	.	.	T	T	P	Q	V
Query Conservation								.	.	.	.	.	.																					.	.																			.														.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																					.	.																			.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	K	Y	Q	K	G	E	E	T	S	T	N	S	I	A	S	I	F	A	W	S	R	G	L	L	K	R	G	E	L	D	N	T	P	A	L	C	K	F	A	N	I	L	E	S	A	T	L	N	T	V	Q	Q	D	G	I	M	T	K	D	L	A	L	A	C	G	N	N	E	R	S	A	Y	V	T	T	E	E	F
Template Known Secondary structure						T	T	T																										T																					T	S												T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	I	C	K	I	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	A	V	E	K	R	L	Q	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions