Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 28 Aligned Residues 346 % Identity 32% Template c2iv0A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	K	T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		V	P	D	N	P	I	I	P	Y	F	E	G	D	G	I	G	K	D	V	V	P	A	A	I	R	V	L	D	A	A	A	D	K	I	G	K	E	V	V	W	F	Q	V	Y	A	.	G	E	D	A	Y	K	L	Y	G	N	Y	L	P	D	D	T	L	N	A	I	K	E	F	R	V	A	L	K	G	P	L	T	T	P
Template Known Secondary structure				S	S	B								S	T	T																				T											.	S								S		S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.																																				.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																																				.	.
Template Sequence		V	.	.	.	.	G	G	G	Y	R	S	L	N	V	T	I	R	Q	V	L	D	L	Y	A	N	V	R	P	V	Y	Y	L	K	G	V	P	S	P	I	K	.	.	H	P	E	K	V	N	F	V	I	F	R	E	N	T	E	D	V	Y	A	G	I	E	W	P	R	G	S	E	E	A	L	K	L	I	R	F	L	K
Template Known Secondary structure		S	.	.	.	.	S	S	S	S	S										T	T												T	T	S			S	S	S	.	.		G	G	G										S	S	S	G	G	G						T	T
Template Predicted Secondary structure			.	.	.	.																																				.	.
Template SS confidence
		103					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
								151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	F	G	V	T	I	R	E	D	S	G	I	G	I	K	P	I	S	E	F	A	T	K	R	L	V	R	M	A	I	R	Y	A	I	E	N	N	R	K	S	V	T	L	V	H	K	G	N	I	M	K	Y	T	E	G	A	F	R	D	W	G	Y	E	V	A	K	Q	E	F	G	E	Y	C	I	T	E	D	E	L
Template Known Secondary structure										T	T																											T	T		S								T	T	T		T	T	T																S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
												214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		W	D	K	Y	G	G	K	Q	P	E	G	K	I	V	V	K	D	R	I	A	D	N	M	F	Q	Q	I	L	T	R	T	D	E	Y	D	V	I	A	L	P	N	L	N	G	D	Y	L	S	D	A	A	A	A	L	I	G	G	L	G	I	A	P	G	S	N	I	G	D	G	I	.	.	.	G	V	F	E	P	V	H
Template Known Secondary structure						T	T				T	T									G	G	G								S	G	G	G																						T	T		G	G	G								T	T		.	.	.						S	S
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.				.	.	.	330	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	.	.	.	.	.	K	G	N	A	T	T	P	Q	V	A	D	A	I	C	K	I
Query Conservation																																																													.	.	.	.	.
Alig confidence																															.	.	.	.	.																										.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		G	S	A	P	K	Y	A	G	Q	N	K	V	N	P	T	A	E	I	L	T	G	A	L	M	F	E	Y	I	G	.	.	.	.	.	W	K	D	A	S	E	M	I	K	K	A	V	E	M	T	I	S	S	G	I	V	T	Y	D	I	H	R	H	M	G	G	T	K	V	G	T	R	E	F	A	E	A	V	V	E	N
Template Known Secondary structure					S	T	T	T	T	S	S		S																T	T	.	.	.	.	.																		T	T												S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.						.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		359	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		409	410	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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