Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 14 Aligned Residues 337 % Identity 30% Template c2e0cA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:409aa long hypothetical nadp-dependent isocitrate PDBTitle: crystal structure of isocitrate dehydrogenase from sulfolobus tokodaii2 strain7 at 2.0 a resolution Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		M	K	T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	.	.	.	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.													.																																.
Template Conservation																																																	.																																.
Template Sequence		P	N	K	P	V	I	L	Y	I	E	G	D	G	I	G	P	E	I	T	N	A	A	I	K	V	I	N	K	A	V	E	R	A	Y	G	S	S	R	E	I	K	W	L	E	V	Y	A	.	G	E	K	A	E	K	L	V	N	D	R	F	P	K	E	T	Q	E	M	L	L	K	Y	R	V	V	L	K	G	P	L	.
Template Known Secondary structure			S	S	B								S	T	T																					T	T	S											.	T								S		S	S																				.
Template Predicted Secondary structure																																																	.																																.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	D	T	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																		.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	S	V	N	V	A	I	R	L	M	L	D	L	Y	A	N	I	R	P	V	K	Y	I	E	G	L	E	S	P	L	K	H	P	.	.	E	K	V	D	M	I	I	F	R	E	N	T	D	D	L	Y	R	G	I	E	Y	P	F	N	S	E	E	A	K	K	I	R	D	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.											T	T												T	T				S	S	S			.	.	T	T										S	S	G	G	G	G						T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
													100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
							148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.																																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	N	E	G	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	K	E	L	K	V	E	I	E	D	D	T	G	I	G	I	K	V	M	S	K	Y	K	T	Q	R	I	T	R	L	A	I	Q	Y	A	I	E	H	K	R	K	K	V	T	I	M	H	K	G	N	V	M	K	Y	T	E	G	A	F	R	E	W	A	Y	E	V	A	L	K	E	Y	R	D	F	I	V	T	E	E
Template Known Secondary structure						S						S	S																											T	T										T	T	T	S	T	T	T																S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
										213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																														.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		E	I	N	Q	G	K	P	D	Q	G	K	I	I	L	N	D	R	I	A	D	N	M	F	Q	Q	I	I	I	R	P	E	E	Y	D	I	I	L	A	P	N	V	N	G	D	Y	I	S	D	A	A	G	A	L	I	G	N	I	G	M	L	G	G	A	N	I	G	D	E	G	.	.	.	G	M	F	E	A	I	H	G
Template Known Secondary structure				T	T	T				T	T	S																			G	G	G		S																			T	T	S		G	G	G								T	T		.	.	.						S	S
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.						.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	K	G	N	A	.	.	.	.	.	T	T	P	Q	V	A	D	A	I	C	K	I	I
Query Conservation																																																																.	.	.	.	.
Alig confidence																														.	.	.	.	.																														.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		T	A	P	K	Y	A	G	K	N	V	A	N	P	T	G	I	I	K	A	G	E	L	M	L	R	W	M	G	.	.	.	.	.	W	N	E	A	A	D	L	I	E	K	A	I	N	M	A	I	R	D	K	K	V	T	Q	D	I	A	R	F	M	G	V	K	A	L	G	T	K	E	Y	A	D	E	L	I	K	I	M
Template Known Secondary structure				G	G	G	T	T	T	T		S		T															T	.	.	.	.	.																		T	T											T	S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.						360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		407	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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