Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 9 Aligned Residues 343 % Identity 29% Template c2d4vD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.																					.	.
Query SS confidence																																			.	.	.																					.	.
Query Sequence		M	K	T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	.	.	.	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	.	.	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A
Query Conservation																																			.	.	.																					.	.
Alig confidence																																			.	.	.												.									.	.
Template Conservation																																																	.
Template Sequence		P	D	Q	P	I	I	P	F	I	E	G	D	G	I	G	C	D	V	T	P	A	M	R	S	V	V	D	A	A	V	A	K	V	Y	G	G	Q	R	Q	I	A	W	M	E	L	F	A	.	G	Q	K	A	V	Q	L	Y	G	E	G	Q	Y	L	P	D	E	T	M	A	A	I	R	E	Y	K	V	A	I	K	G	P
Template Known Secondary structure			S	S	B								S	T	T																					T	T	S											.	T									T	T		S	S
Template Predicted Secondary structure																																																	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		V	G	W	P	D	T	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																																				.	.																											.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																																				.	.
Template Sequence		L	E	T	P	V	.	.	.	.	G	G	G	I	R	S	L	N	V	A	M	R	Q	D	L	D	L	Y	V	C	L	R	P	V	R	Y	F	E	G	T	P	S	P	M	R	.	.	H	P	E	K	V	D	M	V	I	F	R	E	N	S	E	D	I	Y	A	G	I	E	W	P	A	G	S	P	E	A	E	K	I	I
Template Known Secondary structure						S	.	.	.	.	S	S	S	S											T	T												T	T				S	S	S	.	.		G	G	G										S		G	G	G	G						T	T	S
Template Predicted Secondary structure							.	.	.	.																																				.	.
Template SS confidence
		103	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
													149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																															.						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																															.						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	E	G	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	.	E	N	Y	P	E	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																															.						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																															.						.
Template Conservation
Template Sequence		R	F	L	R	E	E	M	G	V	T	K	I	R	F	P	D	S	S	A	I	G	I	K	P	V	S	T	E	G	S	E	R	L	I	R	R	T	I	Q	Y	A	L	E	H	G	K	P	S	V	S	L	V	H	K	G	N	I	M	K	F	T	E	G	G	F	R	D	W	G	Y	A	L	A	E	R	E	F	A	G	R
Template Known Secondary structure							T	S						S		G	G	G																											T	T		S								T	T	T	S	T	T	T																S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
																																	216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	T	W	R	Q	K	A	A	I	S	K	A	E	G	K	A	A	G	Q	K	A	E	Q	Q	A	I	A	D	G	K	L	I	I	K	D	V	I	A	D	N	F	L	Q	Q	I	L	L	R	P	E	D	Y	S	V	V	A	T	L	N	L	N	G	D	Y	V	S	D	A	L	A	A	E	V	G	G	I	G	M	A
Template Known Secondary structure																														T	T																				G	G	G																						T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	K	G
Query Conservation
Alig confidence											.	.	.																																					.	.	.	.	.
Template Conservation											.	.	.																																					.	.	.	.	.
Template Sequence		P	G	A	N	L	S	D	T	H	.	.	.	A	I	F	E	A	T	H	G	T	A	P	D	I	A	G	Q	G	K	A	N	P	S	S	L	I	L	S	A	V	M	M	L	E	H	L	G	.	.	.	.	.	W	G	E	A	A	Q	A	I	V	A	A	M	N	A	T	I	A	A	G	E	V	T	G	D	L	A	A
Template Known Secondary structure								S	S		.	.	.						S					T	T	T	T	T	T	T																		T	T	.	.	.	.	.																		T	T								T
Template Predicted Secondary structure											.	.	.																																					.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.				.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		345							.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	.	A	T	T	P	Q	V	A	D	A	I	C	K	I	I
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	G	D	V	P	A	L	S	T	T	E	F	T	A	A	L	I	R	R	F
Template Known Secondary structure		T	S	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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