Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 2 Aligned Residues 334 % Identity 35% Template c2d1cB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of tt0538 protein from thermus thermophilus hb8 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	.	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T
Query Conservation																																																				.
Alig confidence																													.	.	.	.												.								.																													.
Template Conservation																													.	.	.	.												.																																					.
Template Sequence		R	K	L	I	T	V	I	P	G	D	G	I	G	P	E	C	V	E	A	T	L	K	V	L	E	A	A	.	.	.	.	K	A	P	L	A	Y	E	V	R	E	A	.	G	A	S	V	F	R	R	G	I	A	S	G	V	P	Q	E	T	I	E	S	I	R	K	T	R	V	V	L	K	G	P	L	E	T	P	V	.
Template Known Secondary structure											S	T	T															T	.	.	.	.	T											.	S					T	T	T		T	T	S																								S	.
Template Predicted Secondary structure																													.	.	.	.												.																																					.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	H	E	V	V	I	Q	E	S	V	F
Query Conservation
Alig confidence		.	.	.																																			.	.	.																													.	.	.	.
Template Conservation		.	.	.																																			.	.	.																													.	.	.	.
Template Sequence		.	.	.	G	Y	G	E	K	S	A	N	V	T	L	R	K	L	F	E	T	Y	A	N	V	R	P	V	R	E	F	P	N	V	P	T	P	Y	.	.	.	A	G	R	G	I	D	L	V	V	V	R	E	N	V	E	D	L	Y	A	G	I	E	H	M	Q	T	P	S	.	.	.	.	V	A	Q	T	L	K	L	I
Template Known Secondary structure		.	.	.	S	S	S	S											T	T												T	T				T	T	.	.	.	T	T	S											S		B	G	G	G								T	T	.	.	.	.							B
Template Predicted Secondary structure		.	.	.																																			.	.	.																													.	.	.	.
Template SS confidence
					93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	W	K	G	S	E	K	I	V	R	F	A	F	E	L	A	R	A	E	G	R	K	K	V	H	C	A	T	K	S	N	I	M	K	L	A	E	G	T	L	K	R	A	F	E	Q	V	A	Q	E	Y	P	D	I	E	A	V	H	I	I	V	D	N	A	A	H	Q	L	V	K	R	P	E	Q	F	E	V	I	V	T
Template Known Secondary structure																				T	T										T	T	T		T	T														T	T		T	T	S																		G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	E	R	F	Q	Q	A	H
Query Conservation
Alig confidence																																	.	.	.																																					.	.	.	.	.
Template Conservation																																	.	.	.																																					.	.	.	.	.
Template Sequence		T	N	M	N	G	D	I	L	S	D	L	T	S	G	L	I	G	G	L	G	F	A	P	S	A	N	I	G	N	E	V	.	.	.	A	I	F	E	A	V	H	G	S	A	P	K	Y	A	G	K	N	V	I	N	P	T	A	V	L	L	S	A	V	M	M	L	R	Y	L	E	.	.	.	.	.	E	F	A	T	A
Template Known Secondary structure															T	T	T	T		G	G	G								S	S		.	.	.						S	S				G	G	G	T	T	S	S																		T	T	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.																																					.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																.									.	.	.
Query SS confidence																.									.	.	.
Query Sequence		N	G	I	L	A	A	I	E	E	V	I	A	H	G	.	P	K	T	P	D	M	K	G	.	.	.	N	A	T	T	P	Q	V	A	D	A	I	C	K	I	I	L	R
Query Conservation																.									.	.	.
Alig confidence																.									.	.	.
Template Conservation
Template Sequence		D	L	I	E	N	A	L	L	Y	T	L	E	E	G	R	V	L	T	G	D	V	V	G	Y	D	R	G	A	K	T	T	E	Y	T	E	A	I	I	Q	N	L	G	K
Template Known Secondary structure															T	S	S		B						T	T	T		B												T	T	T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions