Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 22 Aligned Residues 343 % Identity 18% Template c1zorB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima Resolution 2.24 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	V	.	.
Query Conservation																																																																																.	.
Alig confidence																											.	.	.	.												.																																						.	.
Template Conservation																											.	.	.	.												.
Template Sequence		P	I	V	E	L	D	G	D	E	M	A	R	V	M	W	K	M	I	K	E	K	L	I	L	P	.	.	.	.	Y	L	D	I	Q	L	V	Y	F	D	L	.	G	I	K	K	R	D	E	T	D	D	Q	I	T	I	E	A	A	K	A	I	K	K	Y	G	V	G	V	K	C	A	T	I	T	P	D	A	E	R	V
Template Known Secondary structure																								T	G	G	.	.	.	.	G											.								T	T	T														S
Template Predicted Secondary structure																											.	.	.	.												.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
					84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																												.												.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.												.	.	.
Template Sequence		K	E	Y	N	L	K	K	A	W	K	S	P	N	A	T	I	R	A	Y	L	D	G	T	V	F	R	K	P	I	M	.	V	K	N	V	P	P	L	V	K	R	W	.	.	.	K	K	P	I	I	I	G	R	H	A	Y	G	D	I	Y	N	A	V	E	A	K	V	E	G	P	A	E	V	E	L	V	V	R	N	K
Template Known Secondary structure					T		S	S														T										.		T	T	S			S	S	T	T		.	.	.		S									S	S	G	G	G	G								S	S									S	S
Template Predicted Secondary structure																																.												.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	.	.	.	.	.	.	P	E
Query Conservation		.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																				.																													.	.	.	.	.	.
Template Conservation																																													.
Template Sequence		E	N	K	T	L	L	V	H	K	F	E	G	N	G	V	V	M	A	M	H	N	L	E	K	S	I	R	S	F	A	Q	S	C	I	N	Y	A	I	S	E	K	V	D	.	I	W	F	A	T	K	D	T	I	S	K	V	Y	H	A	Y	F	K	D	I	F	Q	E	E	V	D	K	R	K	E	E	L	E	K	A	G
Template Known Secondary structure		S										S	S																													T			.							T	T	T		T	T																T								T
Template Predicted Secondary structure																																													.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																								.																																				.	.															.	.	.	.	.	.
Template Conservation																								.																																				.	.
Template Sequence		V	N	Y	R	Y	M	L	I	D	D	A	A	A	Q	I	L	R	S	E	G	G	M	.	L	W	A	C	M	N	Y	E	G	D	I	M	S	D	M	I	A	S	G	F	G	S	L	G	L	M	T	S	V	L	V	S	P	D	G	.	.	V	Y	E	F	E	A	A	H	G	T	V	R	R	H	Y	Y	R	Y	L	K
Template Known Secondary structure																			S				S	.																					S		G	G	G								T	T		.	.							S	S
Template Predicted Secondary structure																								.																																				.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.									.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																																		.	.	.	.	.	.	.	.
Query SS confidence																										.	.																																		.	.	.	.	.	.	.	.
Query Sequence		Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	.	.	G	D	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	K	G	N	A	.	.	.	.	.	.	.	.	T	T	P	Q	V	A	D	A	I	C	K	I	I
Query Conservation																										.	.																																		.	.	.	.	.	.	.	.
Alig confidence																										.	.																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	K	T	S	T	N	P	T	A	S	I	F	A	W	T	G	A	I	R	K	R	G	E	L	D	G	T	P	E	V	C	E	F	A	D	K	L	E	K	A	V	I	N	T	I	E	S	G	V	I	T	K	D	L	Q	P	F	T	E	P	P	I	D	K	Y	V	T	L	E	E	F	I	D	E	V	K	K	N	L
Template Known Secondary structure		T																										T		T	T																		T	T				G	G	G	T	T	T		S	S			S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		396	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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