Job Description P76251 Confidence 98.52% Date Thu Jan 5 12:21:15 GMT 2012 Rank 32 Aligned Residues 263 % Identity 16% Template c1yxoB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 Resolution 2.01 Å

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		3	.	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	M	R	I	A	A	I	P	G	D	.	.	G	I	G	K	E	V	L	P	E	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	S	L	R	F	A	L	T	P	G	E	P	A	G	I	G	P	D	L	C	L	L	L	A	R	S	A	Q	P	H	P	L	I	A	I	A	S	R	T	L	L	Q	E	R	A	G	Q	L	G	L	A	I	D	L	K	D	V	S	P	A	A	W	P	E	R	P	A	K	A	G	Q	L	Y	V	W	D	T	P	L	A
Template Known Secondary structure												S	T	T	S	S								G	G	G	S			S	S																			T									B	T	T	B				S				T	T										S
Template Predicted Secondary structure
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080
								44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																										.	.
Query SS confidence		.	.	.	.	.	.																										.	.
Query Sequence		.	.	.	.	.	.	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	.	.	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V
Query Conservation		.	.	.	.	.	.																										.	.
Alig confidence		.	.	.	.	.	.			.													.										.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.													.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	V	R	P	G	Q	L	.	D	R	A	N	A	A	Y	V	L	E	T	L	.	T	R	A	G	Q	G	C	L	D	G	H	F	A	G	X	I	T	A	P	V	H	K	G	V	I	N	E	A	G	I	P	F	S	G	H	T	E	F	L	A	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	T
Template Known Secondary structure		S			B	T	T	B		.		G	G	G									.										T	S		S															T	T				S										.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure										.													.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1081	.	.	.	.	.	.	.		.	1090	.	.	.	.	.	.	.	.	.	1100		.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.														.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																																				.	.	.										.	.
Query SS confidence																																																																				.	.	.										.	.
Query Sequence		P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	.	.	.	P	R	K	T	L	T	S	A	T	.	.
Query Conservation																																																																				.	.	.										.	.
Alig confidence						.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.																				.	.	.										.	.
Template Conservation						.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.
Template Sequence		A	Q	V	V	.	.	.	.	.	.	.	.	.	X	X	L	A	T	R	G	L	R	V	A	L	A	.	T	T	H	L	P	L	R	E	V	A	D	A	I	.	.	.	.	.	.	.	S	D	E	R	L	T	R	V	A	R	I	L	H	A	D	L	R	D	K	F	G	I	A	H	P	R	I	L	V	C	G	L	N
Template Known Secondary structure		S				.	.	.	.	.	.	.	.	.						T	T						S	.	S		S	S										.	.	.	.	.	.	.																			T	S			S	S								S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.
Template SS confidence
		1146	.	.	.										1150	.	.	.	.	.	.	.	.	.	1160	.	.		.	.	.	.	.	.	.	1170	.	.	.	.	.								.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.
					191	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure		.	.	.										.	.
Query SS confidence		.	.	.										.	.
Query Sequence		.	.	.	K	S	N	G	L	A	I	S	M	.	.	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P
Query Conservation		.	.	.										.	.
Alig confidence		.	.	.										.	.																								.										.	.									.	.	.	.	.	.
Template Conservation																																							.										.	.									.	.	.	.	.	.
Template Sequence		P	H	A	G	E	G	G	H	L	G	R	E	E	I	E	V	I	E	P	C	L	E	R	L	R	G	E	G	L	D	L	I	G	P	L	P	A	.	D	T	L	F	T	P	K	H	L	.	.	E	H	C	D	A	V	L	A	.	.	.	.	.	.	X	Y	H	D	Q	G	L	P	V	L	K	Y	K	G	F	G	A
Template Known Secondary structure		G	G	G	G	G	G	G	T	S		S					T											T	T										.				S	S					.	.	T	T		S					.	.	.	.	.	.	S	S												T	T	T
Template Predicted Secondary structure																																							.										.	.									.	.	.	.	.	.
Template SS confidence
		1209	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.		.	.	.	.	1250	.	.	.	.			.	.	.	.	.	1260	.	.							.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.
		266	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		S	A	N	L	.	.	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D
Query Conservation						.	.
Alig confidence						.	.									.	.	.
Template Conservation																.	.	.
Template Sequence		A	V	N	V	T	L	G	L	P	I	I	R	T	S	.	.	.	V	D	H	G	T	A	L	D	L	A	G	S	G	R	I	D	S	G	S	L	Q	V	A	L	E	T	A	Y	Q
Template Known Secondary structure								T	S	S	S					.	.	.		S	S				G	G	G	T	T	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		1280	.	.	.	.	.	.	.	.	.	1290	.	.	.				.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions