Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 17 Aligned Residues 325 % Identity 42% Template c1x0lB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G	W	P	D	T	V
Query Conservation
Alig confidence																													.	.	.	.												.																																			.	.	.
Template Conservation																													.	.	.	.												.																																			.	.	.
Template Sequence		A	Y	R	I	C	L	I	E	G	D	G	I	G	H	E	V	I	P	A	A	R	R	V	L	E	A	T	.	.	.	.	G	L	P	L	E	F	V	E	A	E	A	.	G	W	E	T	F	E	R	R	G	T	S	V	P	E	E	T	V	E	K	I	L	S	C	H	A	T	L	F	G	A	A	T	V	P	.	.	.
Template Known Secondary structure											S	T	T															T	.	.	.	.	T											.	S								S	S	S	S											S	S										T	.	.	.
Template Predicted Secondary structure																													.	.	.	.												.																																			.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	E	H	E	V	V	I	Q	E	S	V	F	T
Query Conservation
Alig confidence		.	.	.	.																														.	.	.	.	.	.																										.	.	.	.	.
Template Conservation		.	.	.	.																														.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		.	.	.	.	G	F	F	G	A	I	R	Y	L	R	R	R	L	D	L	Y	A	N	V	R	P	A	K	S	R	P	V	P	G	.	.	.	.	.	.	S	R	P	G	V	D	L	V	I	V	R	E	N	T	E	G	L	Y	V	E	Q	E	R	R	Y	.	.	.	.	.	L	D	V	A	I	A	D	A	V	I	S
Template Known Secondary structure		.	.	.	.	T													T												S	S	T	T	.	.	.	.	.	.			T	T										G	G	G	T									.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.																														.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
						79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	P	E	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	A	S	E	R	I	G	R	A	A	L	R	I	A	E	G	R	P	R	K	T	L	H	I	A	H	K	A	N	V	L	P	L	T	Q	G	L	F	L	D	T	V	K	E	V	A	K	D	F	P	L	V	N	V	Q	D	I	I	V	D	N	C	A	M	Q	L	V	M	R	P	E	R	F	D	V	I	V	T	T
Template Known Secondary structure																		T	S	T	T									T	T	T		T	T														T	T		T	T	S																		G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P	V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	D	F	L	G	N	G	D	E	R	F	Q	Q	A	H	N
Query Conservation
Alig confidence																																.	.	.											.	.																									.	.	.	.	.
Template Conservation																																.	.	.											.	.																									.	.	.	.	.
Template Sequence		N	L	L	G	D	I	L	S	D	L	A	A	G	L	V	G	G	L	G	L	A	P	S	G	N	I	G	D	T	T	.	.	.	A	V	F	E	P	V	H	G	S	A	.	.	I	A	G	K	G	I	A	N	P	T	A	A	I	L	S	A	A	M	M	L	D	Y	L	G	.	.	.	.	.	E	K	E	A	A	K
Template Known Secondary structure																	T		G	G	G								S	S		.	.	.						S	S				.	.			S	S	S																			T	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.											.	.																									.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	K	G	N	A	T	T	P	Q	V	A	D	A	I	C	K	I	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	E	K	A	V	D	L	V	L	E	R	G	P	R	T	P	D	L	G	G	D	A	T	T	E	A	F	T	E	A	V	V	E	A	L	K	S
Template Known Secondary structure													T	S				G	G	G	T																		T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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