Job Description P76251 Confidence 100.00% Date Thu Jan 5 12:21:15 GMT 2012 Rank 20 Aligned Residues 344 % Identity 26% Template c1tyoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		M	K	T	M	R	I	A	A	I	P	G	D	G	I	G	K	E	V	L	P	E	G	I	R	V	L	Q	A	A	A	E	R	W	.	.	.	G	F	A	L	S	F	E	Q	M	E	W	A	S	C	E	Y	Y	S	H	H	G	K	M	M	P	D	D	W	H	E	Q	L	S	R	F	D	A	I	Y	F	G	A	V	G
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.												.
Template Conservation																																																	.
Template Sequence		P	D	N	P	V	V	A	F	I	R	G	D	G	V	G	P	E	V	V	E	S	A	L	K	V	V	D	A	A	V	K	K	V	Y	G	G	S	R	R	I	V	W	W	E	L	L	A	.	G	H	L	A	R	E	K	C	G	E	L	L	P	K	A	T	L	E	G	I	R	L	A	R	V	A	L	K	G	P	L	E
Template Known Secondary structure			S	S	B								S	T	T																					T	T	S											.	S								S	S	S	S												S
Template Predicted Secondary structure																																																	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		W	P	D	T	V	P	D	H	I	S	L	W	G	S	L	L	K	F	R	R	E	F	D	Q	Y	V	N	L	R	P	V	R	L	F	P	G	V	P	C	P	L	A	G	K	Q	P	G	D	I	D	F	Y	V	V	R	E	N	T	E	G	E	Y	S	S	L	G	G	R	V	N	E	G	T	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence					.	.	.	.																														.	.	.																																			.	.	.	.	.	.	.
Template Conservation					.	.	.	.																														.	.	.
Template Sequence		T	P	V	.	.	.	.	G	T	G	Y	R	S	L	N	V	A	I	R	Q	A	L	D	L	Y	A	N	I	R	P	V	R	Y	Y	G	Q	.	.	.	P	A	P	H	K	Y	A	D	R	V	D	M	V	I	F	R	E	N	T	E	D	V	Y	A	G	I	E	W	P	H	D	S	P	E	A	A	R	I	R	R	F
Template Known Secondary structure				T	.	.	.	.	T	S		T	T											T												S		.	.	.			S		T	T	G	G	G										S	S	S	G	G	G						T	T	S
Template Predicted Secondary structure					.	.	.	.																														.	.	.
Template SS confidence
		112	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
											152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	H	E	V	V	I	Q	E	S	V	F	T	R	R	G	V	D	R	I	L	R	Y	A	F	E	L	A	Q	S	R	P	R	K	T	L	T	S	A	T	K	S	N	G	L	A	I	S	M	P	Y	W	D	E	R	V	E	A	M	A	E	N	Y	P	E	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	E	E	F	G	I	S	I	R	E	D	A	G	I	G	V	K	P	I	S	R	F	A	T	R	R	L	M	E	R	A	L	E	W	A	L	R	N	G	N	T	V	V	T	I	M	H	K	G	N	I	M	K	Y	T	E	G	A	F	M	R	W	A	Y	E	V	A	L	E	K	F	R	E	H	V	V	T	E	Q
Template Known Secondary structure												T	T																												T										T	T	T	S	T	T	T																S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
																216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	W	D	K	Q	H	I	D	I	L	C	A	R	F	V	M	Q	P	E	R	F	D	V	V	V	A	S	N	L	F	G	D	I	L	S	D	L	G	P	A	C	T	G	T	I	G	I	A	P	S	A	N	L	N	P	E	R	T	F	P	S	L	F	E	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		E	V	Q	E	K	Y	G	G	V	R	P	E	G	K	I	L	V	N	D	R	I	A	D	N	M	L	Q	Q	I	I	T	R	P	W	D	Y	Q	V	I	V	A	P	N	L	N	G	D	Y	I	S	D	A	A	S	A	L	V	G	G	I	G	M	A	A	G	M	N	M	G	D	G	I	.	.	.	A	V	A	E	P
Template Known Secondary structure							S	T	T				T	T																				G	G	G		S																				T	T		G	G	G								S	S		.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.							.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																													.																																			.	.	.	.	.	.
Query SS confidence																													.																																			.	.	.	.	.	.
Query Sequence		V	H	G	S	A	P	D	I	Y	G	K	N	I	A	N	P	I	A	T	I	W	A	G	A	M	M	L	.	D	F	L	G	N	G	D	E	R	F	Q	Q	A	H	N	G	I	L	A	A	I	E	E	V	I	A	H	G	P	K	T	P	D	M	.	.	.	.	.	.	K	G	N	A	T	T	P	Q	V	A	D	A
Query Conservation																													.																																			.	.	.	.	.	.
Alig confidence																													.					.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		V	H	G	T	A	P	K	Y	A	G	K	D	L	I	N	P	S	A	E	I	L	S	A	S	L	L	I	G	E	F	M	G	.	.	.	.	.	W	R	E	V	K	S	I	V	E	Y	A	I	R	K	A	V	Q	S	K	K	V	T	Q	D	L	A	R	H	M	P	G	V	Q	P	L	R	T	S	E	Y	T	E	T
Template Known Secondary structure		S	S				G	G	G	T	T	S	S		S															T	T	S		.	.	.	.	.																		T	T			B					T	T	S	T	T				B
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		355	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	K	I	I	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	A	Y	I	D	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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