Return to main results Retrieve Phyre Job Id

Job DescriptionP67143
Confidence3.95%DateThu Jan 5 12:10:30 GMT 2012
Rank12Aligned Residues112
% Identity11%Templated1iwga8
SCOP infoMultidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain
Resolution3.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80....... ..90.........100.........110...
Predicted Secondary structure 


.......



















Query SS confidence 














































. . . . . . .

























Query Sequence  VRELLIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKM. . . . . . . IFPSASGNSSGLPAGEEPFIVPLAIP
Query Conservation        
  


 
   
  

  




 

 






  

  
.......
                 





 
Alig confidence 














































.......

























Template Conservation      
  
  
  

      
   
      
       


 

  
 
                 
   
       
Template Sequence  WSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRP
Template Known Secondary structure  SSGGGTT

B
TTSS


TTTT
Template Predicted Secondary structure 









Template SS confidence 















































































   895....900.........910.........920.........930.........940.........950.........960.........970....
 
   114.....120.........130.........140.........150..
Predicted Secondary structure 





Query SS confidence 






































Query Sequence  LVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVI
Query Conservation 

 





 

 
              

       
 
Alig confidence 






































Template Conservation 
  
 

      

             

     

  
Template Sequence  ILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVT
Template Known Secondary structure  TT
SSS
Template Predicted Secondary structure 



Template SS confidence 






































   975....980.........990.........1000.........1010...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions