Job Description P76393 Confidence 99.97% Date Thu Jan 5 12:22:31 GMT 2012 Rank 216 Aligned Residues 267 % Identity 12% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		2	.	.	.	.				.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure							.	.	.																													.	.	.	.	.												.
Query SS confidence							.	.	.																													.	.	.	.	.												.
Query Sequence		K	T	N	I	K	.	.	.	V	F	T	S	T	G	E	L	T	T	L	G	R	E	L	G	K	G	G	E	G	A	V	Y	D	I	E	E	.	.	.	.	.	F	V	D	S	V	A	K	I	Y	H	T	.	P	P	P	A	L	K	Q	D	K	L	A	F	M	A	A	T	A	D	A	Q	L	L	N	Y	V	A	W
Query Conservation							.	.	.																													.	.	.	.	.												.
Alig confidence							.	.	.																													.	.	.	.	.												.																											.
Template Conservation																																																																																	.
Template Sequence		K	M	D	Y	D	F	K	V	K	L	S	S	E	R	E	R	V	E	D	L	F	E	Y	E	G	C	K	V	G	H	V	Y	K	A	K	R	K	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	G	I	S	M	S	A	C	R	E	I	A	L	L	R	E	L	K	H	P	N	V	I	S	L	Q	K	.
Template Known Secondary structure			S																						S	S												S	S	S	S											S	S	S	S																		T	T	B						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	T	L	H	G	G	R	G	G	K	V	I	G	F	M	M	P	K	V	S	G	K	E	P	I	H	M	I	Y	S	P	A	H	R	R	Q	S	Y	P	H	C	A	W	D	F	L	L	Y	V	A	R	N	I	A	S	S	F	A	T	V	H	E	H	G	H	V	V	G	D	V	N	Q	N	S	F	M	V	G
Query Conservation
Alig confidence		.	.	.	.																																.	.	.	.	.	.
Template Conservation		.	.	.	.																																.	.	.	.	.	.
Template Sequence		.	.	.	.	V	F	L	S	H	A	D	R	K	V	W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	H	R	A	S	.	.	.	.	.	.	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I	H	Y	L	H	A	N	W	V	L	H	R	D	L	K	P	A	N	I	L	V	M
Template Known Secondary structure		.	.	.	.					T	T	T	T										S														.	.	.	.	.	.																								T	T								G	G	G
Template Predicted Secondary structure		.	.	.	.																																.	.	.	.	.	.
Template SS confidence
						84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		153	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		R	D	S	.	.	.	.	K	V	V	L	I	D	S	D	S	F	Q	I	N	A	N	G	T	L	H	L	C	E	V	G	V	S	H	F	T	P	P	E	L	Q	T	L	P	S	F	V	G	F	E	R	T	E	N	H	D	N	F	G	L	A	L	L	I	F	H	V	L	F	G	G	R	H	P	Y	S	G	V	P	L
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		G	E	G	P	E	R	G	R	V	K	I	A	D	M	G	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	T	F	W	Y	R	A	P	E	L	L	L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F	A	E	L	L	.	T	S	E	P	I	F	H	C	R	Q	N
Template Known Secondary structure			S	S	T	T	T	T							T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T							T	T			S																			.		S	S		T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	D	A	G	N	A	L	E	T	D	I	T	H	F	R	Y	A	Y	A	S	D	N	Q	R	R	G	L	K	P	P	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	P	L	S	M	L	P	S	D	V	E	A	M	F	Q	Q	A	F	T	E	S	G	V	A	T	G	R
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																																																												.	.
Template Sequence		P	Y	H	H	D	Q	L	D	R	I	F	N	V	M	G	F	P	A	D	K	D	W	E	D	I	K	K	M	P	E	H	S	T	L	M	K	D	F	R	R	N	T	Y	T	N	C	S	L	I	K	Y	M	E	K	H	K	V	K	P	D	S	K	A	F	H	L	L	Q	K	L	L	T	M	D	.	.	P	I	K	R
Template Known Secondary structure																				T	T	T		G	G	G	G	G	S	T	T										G	G	G	G	T	T									T	T	T			T	T	S										S		S	S	.	.	G	G	G	S
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.
		290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	A	K	A	W	V	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	S	E	Q	A	M	Q	D
Template Known Secondary structure									T	S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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