Job Description P76393 Confidence 100.00% Date Thu Jan 5 12:22:31 GMT 2012 Rank 117 Aligned Residues 279 % Identity 15% Template c3op5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: human vaccinia-related kinase 1 Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.	.															.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	T	N	I	K	V	F	T	S	T	G	E	L	T	T	L	G	R	E	L	G	K	G	G	E	G	A	V	Y	D	I	E	E	.	.	.	.	.	.	.	.	F	V	D	S	V	A	K	I	Y	H	T	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	K	Q	D	K	L	A	F	M
Query Conservation																																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		F	A	V	G	E	I	I	T	D	M	A	A	A	A	W	K	V	G	L	P	I	.	.	G	Q	F	G	C	I	Y	L	A	D	M	N	S	S	E	S	V	G	S	D	A	P	C	V	V	K	V	E	P	S	D	N	G	P	L	F	T	E	L	K	F	Y	Q	R	A	A	K	P	E	Q	I	Q	K	W	I	R	T
Template Known Secondary structure		S		T	T						T	T											.	.	.													S	S				T	T		S								T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	T	A	D	A	Q	L	L	N	Y	V	A	W	P	Q	A	T	L	H	G	G	R	G	G	K	V	I	G	F	M	M	P	K	V	S	G	K	E	P	I	H	M	I	Y	S	P	A	H	R	R	Q	S	Y	P	H	C	A	W	D	F	L	L	Y	V	A	R	N	I	A	S	S	F	A	T	V	H	E	H	G
Query Conservation
Alig confidence																	.	.	.																		.														.	.	.	.	.	.
Template Conservation																	.	.	.																		.														.	.	.	.	.	.
Template Sequence		R	K	L	K	Y	L	G	V	P	K	Y	W	G	S	G	.	.	.	L	H	D	K	N	G	K	S	Y	R	F	M	I	M	D	R	F	.	G	S	D	L	Q	K	I	Y	E	A	N	A	K	.	.	.	.	.	.	R	F	S	R	K	T	V	L	Q	L	S	L	R	I	L	D	I	L	E	Y	I	H	E	H	E
Template Known Secondary structure		T	T		S				S								.	.	.					T	T												.											T	T	S	.	.	.	.	.	.																								T	T
Template Predicted Secondary structure																	.	.	.																		.														.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																			.	.																									.	.	.
Query SS confidence																			.	.																									.	.	.
Query Sequence		H	V	V	G	D	V	N	Q	N	S	F	M	V	G	R	D	S	.	.	K	V	V	L	I	D	S	D	S	F	Q	I	N	A	N	G	T	L	H	L	C	E	V	G	.	.	.	V	S	H	F	T	P	P	E	L	Q	T	L	P	S	F	V	G	F	E	R	T	E	N	H	D	N	F	G	L	A	L	L	I	F
Query Conservation																			.	.																									.	.	.
Alig confidence																			.	.																									.	.	.
Template Conservation
Template Sequence		Y	V	H	G	D	I	K	A	S	N	L	L	L	N	Y	K	N	P	D	Q	V	Y	L	V	D	Y	G	L	A	Y	R	Y	C	P	E	G	V	H	K	A	Y	A	A	D	P	K	R	C	H	D	G	T	I	E	F	T	S	I	D	A	H	N	G	V	A	P	S	R	R	G	D	L	E	I	L	G	Y	C	M	I
Template Known Secondary structure									G	G	G					S	S		T	T								T	T				S	S	G	G	G					S	S			S	S							T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	L	F	G	G	R	H	P	Y	S	G	V	P	L	I	S	D	A	G	N	A	L	E	T	D	I	T	H	F	R	Y	A	Y	A	S	D	N	Q	R	R	G	L	K	P	P	P	R	S	I	P	L	S	M	L	P	S	D	V	E	A	M	F	Q	Q	A	F	T	E	S	G	V	A	T	G	R	P	T	A	K
Query Conservation
Alig confidence					.																																			.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation					.																																			.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		Q	W	L	.	T	G	H	L	P	W	E	D	N	L	K	D	P	K	Y	V	R	D	S	K	I	R	Y	R	E	N	I	A	S	L	M	D	K	C	.	.	.	.	.	.	.	.	.	.	.	F	P	A	A	N	A	P	G	E	I	A	K	Y	M	E	T	V	K	L	L	D	.	.	Y	T	E	K	P	L	Y	E
Template Known Secondary structure					.		S			T	T	G	G	G	T	T																								.	.	.	.	.	.	.	.	.	.	.	S		T	T															T			.	.	T	T
Template Predicted Secondary structure					.																																			.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		253	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.												290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	V	A	A	L	D	S	L	R	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	R	D	I	L	L	Q	G	L	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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