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Job DescriptionP76393
Confidence100.00%DateThu Jan 5 12:22:31 GMT 2012
Rank190Aligned Residues254
% Identity15%Templatec3hkoA_
PDB info PDB header:transferaseChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase with a kinase PDBTitle: crystal structure of a cdpk kinase domain from cryptosporidium parvum,2 cgd7_40
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TTLGRELGKGGEGAVYDIEE. . . FVDSVAKIYHTPPPA. . . . . LKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVI
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Template Sequence  YHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQKDVERIKTEVRLMKKLHHPNIARL. . . . . . . YEVYEDEQYI
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SS
TTT






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   10.........20.........30.........40.........50.........60.........70.. .......80..
 
   87..90.........100.........110. ........120.........130.....
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Query Sequence  GFMMPKVSGKEPIHMIYSPAHRRQS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YPHCAWDFLLYVARNIASSFATVH
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Template Sequence  CLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIFRESLDFVQREKLISNIMRQIFSALHYLH
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   136...140.........150.........160.........170.........180.........190.........200.........210.....
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Query Sequence  EHGHVVGDVNQNSFMVGRDSKVVLIDSDSFQINANGTLHLCEVGVSHFTPPELQTLPSFVGFERTENHDNFGLALLIFHV
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Template Sequence  NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGAGTPYFVAPEVL. . . . NTTNESYGPKCDAWSAGVLLHLL
Template Known Secondary structure  TT




GGGS
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TT
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   168.170.........180.........190.........200.........210.........220 .........230.........240...
 
   216...220.........230.........240.........250.........260.........270.........280.........290.....
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Query Sequence  LFGGRHPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMFQQAFTESGVATGRPTAKAW
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Template Sequence  L. MGAVPFPGVNDADTISQVLNK. . . . . . . . . . . . . . . . . . KLCFENPNYNVLSPLARDLLSNLLNRN. . VDERFDAMRA
Template Known Secondary structure  .SS
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TTSGGGGGS
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   252 .......260.........270... ......280.........290.........300 .........310
 
   296...300
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Query Sequence  VAALD
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Template Sequence  LQHPW
Template Known Secondary structure  S
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   311....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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