Job Description P76393 Confidence 99.97% Date Thu Jan 5 12:22:31 GMT 2012 Rank 221 Aligned Residues 219 % Identity 13% Template c3famA_ PDB info PDB header:transferase Chain: A: PDB Molecule:carbon catabolite-derepressing protein kinase; PDBTitle: crystal structure of the protein kinase domain of yeast amp-2 activated protein kinase snf1 Resolution 2.20 Å

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		18	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure								.												.	.	.															.
Query SS confidence								.												.	.	.															.
Query Sequence		G	R	E	L	G	K	.	G	G	E	G	A	V	Y	D	I	E	E	.	.	.	F	V	D	S	V	A	K	I	Y	H	T	P	P	P	.	A	L	K	Q	D	K	L	A	F	M	A	A	T	A	D	A	Q	L	L	N	Y	V	A	W	P	Q	A	T	L	H	G	G	R	G	G	K	V	I	G	F	M	M	P	K
Query Conservation								.												.	.	.															.
Alig confidence								.												.	.	.															.																						.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.
Template Sequence		G	A	H	I	G	N	Y	Q	I	V	K	K	V	K	L	A	Y	H	T	T	T	G	Q	K	V	A	L	K	I	I	N	K	K	V	M	Q	G	R	I	E	R	E	I	S	Y	L	R	L	L	R	H	P	H	I	I	K	L	.	.	.	.	.	.	.	Y	D	V	I	K	S	K	D	E	I	I	M	V	I	E	Y
Template Known Secondary structure				B				B		S										T	T	T											S																				T	T	B				.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.								.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	G	K	E	P	I	H	M	I	Y	S	P	A	H	R	R	Q	S	Y	P	H	C	A	W	D	F	L	L	Y	V	A	R	N	I	A	S	S	F	A	T	V	H	E	H	G	H	V	V	G	D	V	N	Q	N	S	F	M	V	G	R	D	S	K	V	V	L	I	D	S	D	S	F	Q	I	N	A	N	G	T
Query Conservation
Alig confidence			.													.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template Conservation			.													.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template Sequence		A	.	G	N	E	L	F	D	Y	I	V	Q	R	D	.	.	.	.	.	.	.	K	M	S	E	Q	E	A	R	R	F	F	Q	Q	I	I	S	A	V	E	Y	C	H	R	H	K	I	V	H	R	D	L	K	P	E	N	L	L	L	D	E	H	L	N	V	K	I	A	D	F	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.										T	S	S	.	.	.	.	.	.	.	S																							T	T							S	G	G	G					T	T	S							S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.													.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		135		.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	L	C	E	V	G	V	S	H	F	T	P	P	E	L	Q	T	L	P	S	F	V	G	F	E	R	T	E	N	H	D	N	F	G	L	A	L	L	I	F	H	V	L	F	G	G	R	H	P	Y	S	G	V	P	L	I	S	D	A	G	N	A	L	E	T	D	I	T	H	F	R	Y	A	Y	A	S	D	N	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	P	N	Y	A	A	P	E	V	I	S	G	P	E	V	D	V	W	S	C	G	V	I	L	Y	V	M	L	.	C	R	R	L	P	F	D	D	E	S	I	P	V	L	F	K	N	I	S	N	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T									T																.		S	S		S	S			S	S											T			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	G	L	K	P	P	P	R	S	I	P	L	S	M	L	P	S	D	V	E	A	M	F	Q	Q	A	F	T	E	S	G	V	A	T	G	R	P	T	A	K	A	W	V	A	A	L	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	T	L	P	K	F	L	S	P	G	A	A	G	L	I	K	R	M	L	I	V	N	.	.	P	L	N	R	I	S	I	H	E	I	M	Q	D	D	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.				T	T	S												S		S	S	.	.	G	G	G	S							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions