|   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
. | . | . | . | . | 40 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  | . | . | . |
|
|  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | L | T | T | L | G | R | E | L | G | K | G | G | E | G | A | V | Y | D | I | E | E | . |
. |
. |
F | V | D | S | V | A | K | I | Y | H | . |
. |
. |
. |
. |
. |
. |
T | P | P | P | A | L | K | Q | D | K | L | A | F | M | A | A | T | A | D | A | Q | L | L | N | Y | V | A | W | P | Q | A | T | L | H | G | G | R | G |
Query Conservation |   |
  |   |   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|   |
|   |   | . | . | . |   |   |   |
|
|   |
|   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
Template Conservation |   |
|   |
|   |
|   |   |   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |
|
|   |
|
|   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |
Template Sequence |   |
G | K | Y | L | M | G | D | L | L | G | E | G | S | Y | G | K | V | K | E | V | L | D | S | E | T | L | C | R | R | A | V | K | I | L | K | K | K | K | L | R | R | I | P | N | G | E | A | N | V | K | K | E | I | Q | L | L | R | R | L | R | H | K | N | V | I | Q | L | V | D | V | . |
. |
. |
. |
. |
. |
. |
. |
L | Y |
Template Known Secondary structure |   |
|
| B |
|
|
|
|  |  |  |  |
| S | S |
|  |  |  |  |  |  | B | T | T | T |
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| T | T | B |
|
|  |  |  |  | . | . | . | . | . | . | . | . |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
47 | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | V | I | G | F | M | M | P | K | V | S | G | K | E | P | I | H | M | I | Y | S | P | A | H | R | R | Q | S | Y | P | H | C | A | W | D | F | L | L | Y | V | A | R | N | I | A | S | S | F | A | T | V | H | E | H | G | H | V | V | G | D | V | N | Q | N | S | F | M | V | G | R | D | S | K | V | V | L | I | D | S |
Query Conservation |   |
  |   |   |   |   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |
|   |
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |
|   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |
|
|
Template Sequence |   |
N | E | K | M | Y | M | V | M | E | Y | C | V | C | G | M | Q | E | M | L | D | S | V | P | E | K | . |
. |
. |
. |
. |
. |
R | F | P | V | C | Q | A | H | G | Y | F | C | Q | L | I | D | G | L | E | Y | L | H | S | Q | G | I | V | H | K | D | I | K | P | G | N | L | L | L | T | T | G | G | T | L | K | I | S | A | L |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  | S | T | T |
| . | . | . | . | . | . | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |
| S |
|
| S | G | G | G |  |  |  |
| T | T |
|
|  |  |  |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
  |
  |   |
163 | . | . | . | . | . | . | 170 | . | |
|
|
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | S | F | Q | I | N | A | N | G | . |
. |
. |
T | L | H | L | C | E | V | G | V | S | H | F | T | P | P | E | L | Q | T | L | P | S | F | V | G | F | E | R | T | E | N | H | D | N | F | G | L | A | L | L | I | F | H | V | L | F | G | G | R | H | P | Y | S | G | V | P | L | I | S | D | A | G | N | A | L | E | T | D |
Query Conservation |   |
|   |
|   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|
|   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|   |   |
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|
|
|
|
| . |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
G | V | A | E | A | L | H | P | F | A | A | D | D | T | C | R | T | S | Q | G | S | P | A | F | Q | P | P | E | I | A | N | G | L | D | . |
. |
. |
T | F | S | G | F | K | V | D | I | W | S | A | G | V | T | L | Y | N | I | T | . |
T | G | L | Y | P | F | E | G | D | N | I | Y | K | L | F | E | N | I | G | K | G | S |
Template Known Secondary structure |   |
T | T |
|  |  |
|
| T | T |
| S | S |
|  |  |
|
|
|
| S |
| G | G | G |
|
|  |  |  |  | T |
|
| S | . | . | . |
|  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  | S | S |
| S |
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
| . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
196 | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | |
|
|
230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | |
250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . |
  |
  |   |
240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | T | H | F | R | Y | A | Y | A | S | D | N | Q | R | R | G | L | K | P | P | P | R | S | I | P | L | S | M | L | P | S | D | V | E | A | M | F | Q | Q | A | F | T | E | S | G | V | A | T | G | R | P | T | A | K | A | W | V | A | A | L | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |
| . | . |
|   |   |
|   |
|   |   |
|
|
|   |
|   |   |
Template Sequence |   |
Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | I | P | G | D | C | G | P | P | L | S | D | L | L | K | G | M | L | E | Y | E | . |
. |
P | A | K | R | F | S | I | R | Q | I | R | Q | H | S | W |
Template Known Secondary structure |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
| S | S | S |
|  |  |  |  |  |  |  |  |  |  | T |
| S | S | . | . | T | T | T | S |
|
|  |  |  |  |  |  | S |  |  |
Template Predicted Secondary structure |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
272 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | |
|
. | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . |
  |