Job Description P76393 Confidence 100.00% Date Thu Jan 5 12:22:31 GMT 2012 Rank 111 Aligned Residues 271 % Identity 16% Template c2v62A_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk2; PDBTitle: structure of vaccinia-related kinase 2 Resolution 1.7 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.																		.																		.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.																		.																		.	.	.	.	.	.	.	.
Query Sequence		M	K	T	N	I	K	V	F	T	S	T	G	E	L	T	T	L	G	R	E	L	G	K	G	G	E	G	A	V	Y	D	I	E	E	.	.	.	F	V	D	S	V	A	K	I	Y	H	T	P	P	P	A	L	K	.	Q	D	K	L	A	F	M	A	A	T	A	D	A	Q	L	L	N	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.																		.																		.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.												.	.	.																		.																		.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		F	P	E	G	K	V	L	D	D	M	E	G	N	Q	W	V	L	.	.	.	.	.	.	G	K	K	I	L	I	Y	L	A	F	P	T	N	K	P	E	K	D	A	R	H	V	V	K	V	E	Y	Q	E	G	P	L	F	S	E	L	K	F	Y	Q	R	V	A	K	K	D	C	I	K	K	W	I	E	R	K	Q	L
Template Known Secondary structure				T	T						T	T	S						.	.	.	.	.	.												S	S	S		G	G	G																																						T
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
			69	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.									.	.	.
Query SS confidence		.									.	.	.
Query Sequence		.	Y	V	A	W	P	Q	A	T	.	.	.	L	H	G	G	R	G	G	K	V	I	G	F	M	M	P	K	V	S	G	K	E	P	I	H	M	I	Y	S	P	A	H	R	R	Q	S	Y	P	H	C	A	W	D	F	L	L	Y	V	A	R	N	I	A	S	S	F	A	T	V	H	E	H	G	H	V	V	G	D	V
Query Conservation		.									.	.	.
Alig confidence		.									.	.	.																		.													.	.	.	.	.	.	.
Template Conservation																															.													.	.	.	.	.	.	.
Template Sequence		D	Y	L	G	I	P	L	F	Y	G	S	G	L	T	E	F	K	G	R	S	Y	R	F	M	V	M	E	R	L	.	G	I	D	L	Q	K	I	S	G	Q	N	G	.	.	.	.	.	.	.	T	F	K	K	S	T	V	L	Q	L	G	I	R	M	L	D	V	L	E	Y	I	H	E	N	E	Y	V	H	G	D	I
Template Known Secondary structure		S															S	S	S												.									B	G	G	G	.	.	.	.	.	.	.	B																							T	T				S
Template Predicted Secondary structure																															.													.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																														.	.	.
Query SS confidence											.	.																														.	.	.
Query Sequence		N	Q	N	S	F	M	V	G	R	.	.	D	S	K	V	V	L	I	D	S	D	S	F	Q	I	N	A	N	G	T	L	H	L	C	E	V	G	V	S	H	.	.	.	F	T	P	P	E	L	Q	T	L	P	S	F	V	G	F	E	R	T	E	N	H	D	N	F	G	L	A	L	L	I	F	H	V	L	F	G	G
Query Conservation											.	.																														.	.	.
Alig confidence											.	.																														.	.	.																																			.
Template Conservation																																																																															.
Template Sequence		K	A	A	N	L	L	L	G	Y	K	N	P	D	Q	V	Y	L	A	D	Y	G	L	S	Y	R	Y	C	P	N	G	N	H	K	Q	Y	Q	E	N	P	R	K	G	H	N	G	T	I	E	F	T	S	L	D	A	H	K	G	V	A	L	S	R	R	S	D	V	E	I	L	G	Y	C	M	L	R	W	L	.	C	G
Template Known Secondary structure		S	G	G	G					S	S	S	T	T	S							T	T				S	S	G	G	G									G	G	G		S		S		T	T	T								T																					.		S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	P	Y	S	G	V	P	L	I	S	D	A	G	N	A	L	E	T	D	I	T	H	F	R	Y	A	Y	A	S	D	N	Q	R	R	G	L	K	P	P	P	R	S	I	P	L	S	M	L	P	S	D	V	E	A	M	F	Q	Q	A	F	T	E	S	G	V	A	T	G	R	P	T	A	K	A	W	V	A	A	L
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		K	L	P	W	E	Q	N	L	K	D	P	V	A	V	Q	T	A	K	T	N	L	L	D	E	L	P	Q	S	V	L	K	W	A	P	.	.	.	.	.	.	.	.	.	.	.	S	G	S	S	C	C	E	I	A	Q	F	L	V	C	A	H	S	L	A	.	.	Y	D	E	K	P	N	Y	Q	A	L	K	K	I	L
Template Known Secondary structure		S		T	T	G	G	G	T	T															T	T	T							S		.	.	.	.	.	.	.	.	.	.	.	T	T	S														T			.	.	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280												.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions