Job Description P31435 Confidence 99.86% Date Thu Jan 5 11:47:26 GMT 2012 Rank 3 Aligned Residues 372 % Identity 11% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	Y	G	M	G	D	A	A	S	H	I	I	F	D	N	V	M	L	Y	M	M	F	F	Y	T	D	I	F	G	I	P	A	G	F	V	G	T	M	F	L	V	A	R	A	L	D	A	I	S	D	P	C	M	G	L	L	A	D	R	T	R	S	R	W	G	K	F	R	P	W	V	L	F	G	A	L	P	F	G
Query Conservation
Alig confidence																									.																																										.	.	.	.	.
Template Conservation																									.																																										.	.	.	.	.
Template Sequence		L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	.	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	.	.	.	.	.	V	I	L	V	G	M	S	I	F	M
Template Known Secondary structure																									.			T	T	S	S	S	T	T																			T	T						T	T	S					.	.	.	.	.
Template Predicted Secondary structure																									.																																										.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	C	V	L	A	Y	S	T	P	D	L	S	M	N	G	K	M	I	Y	A	A	I	T	Y	T	L	L	T	L	L	Y	T	V	V	N	I	P	Y	C	A	L	G	G	V	I	T	N	D	P	T	Q	R	I	S	L	Q	S	W	R	F	V	L	A	T	A	G	G	M	L	S	T	V	L	M	M	P	L	V	N
Query Conservation
Alig confidence																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		L	A	T	L	V	A	V	T	T	S	S	L	T	V	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M
Template Known Secondary structure																.	.	.	.	.	.																													T	S	S			S																							S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	G	D	N	K	P	L	G	F	Q	G	G	I	A	V	L	S	V	V	A	F	M	M	L	A	F	C	F	F	T	T	K	E	R	V	E	A	P	P	T	T	T	S	M	R	E	D	L	R	D	I	W	Q	N	D	Q	W	R	I	V	G	L	L	T	I	F	N	I	L	A	V	C	V	R	G	G	A	M
Query Conservation
Alig confidence																										.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	.	.	.	.	.	.	.	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G
Template Known Secondary structure																									S	.	.	.	.	.	.	.	S				S	T	T	T						T	T	T		S	T																														S
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.								.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		M	Y	Y	V	T	W	I	L	G	T	P	E	V	F	V	A	F	L	T	T	Y	C	V	G	N	L	I	G	S	A	L	A	K	P	L	T	D	W	K	C	K	V	T	I	F	W	W	T	N	A	L	L	A	V	I	S	L	A	M	F	F	V	P	.	M	Q	A	S	I	T	M	F	V	F	I	F	V	I	G	V
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F
Template Known Secondary structure			S	S																	T														T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	Q	L	V	T	P	I	Q	W	V	M	M	S	D	T	V	D	Y	G	E	W	C	N	G	K	R	L	T	G	I	S	F	A	G	T	L	F	V	L	K	L	G	L	A	F	G	G	A	L	I	G	W	M	L	A	Y	G	G	Y	D	A	A	E	K	A	Q	N	S	A	T	I	S	I	I	I	A	L	F	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	.	.	.	.	.	.	.	.	P	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure						T	S	S	T	T						T			.	.	.	.	.	.	.	.																							S	T	T		T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.									.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.																					.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	P	A	I	C	Y	L	L	S	A	I	I	A	K	R	Y	Y	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	G	L	L	M	T	L	M	G	L	L	I	V	L	C	W	L	P	L
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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