Job Description P38036 Confidence 100.00% Date Thu Jan 5 11:57:49 GMT 2012 Rank 6 Aligned Residues 339 % Identity 19% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

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		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.													.	.	.	.	.	.
Query SS confidence																																					.													.	.	.	.	.	.
Query Sequence		Y	F	Q	D	R	Q	Q	D	A	S	R	V	L	E	L	S	G	L	V	S	N	K	R	C	Y	E	G	V	H	A	L	L	D	N	G	.	Y	Q	P	R	Q	L	Q	V	L	V	D	A	.	.	.	.	.	.	L	P	V	A	P	G	L	T	V	I	E	A	P	T	G	S	G	K	T	E	T	A	L	A	Y	A
Query Conservation																																					.													.	.	.	.	.	.
Alig confidence																																					.													.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	Q	L	A	F	Q	K	I	R	K	E	R	E	K	H	G	G	I	P	K	K	I	E	G	K	L	A	E	E	F	I	K	S	L	P	F	K	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	Q	L	A	I
Template Known Secondary structure																										T										S	S	S																			S	S	S										S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	L	I	D	Q	Q	I	A	D	S	V	I	F	A	L	P	T	Q	A	T	A	N	A	M	L	T	R	M	E	A	S	A	S	H	L	F	S	S	P	N	L	I	L	A	H	G	N	S	R	F	N	H	L	F	Q	S	I	K	S	R	A	I	T	E	Q	G	Q	E	E	A	W	V	Q	C	C	Q	W	L	S
Query Conservation
Alig confidence									.	.																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	N	Y	E	A	G	.	.	F	Q	T	A	F	M	V	P	T	S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	K	F	N	.	.	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	.	.	S							S																	T		S	S	.	.								S	S	S														S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.																													.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.			.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		Q	S	N	K	K	V	F	L	G	Q	I	G	V	C	T	I	D	Q	V	L	I	S	V	L	P	V	K	H	R	F	I	R	G	L	G	I	G	R	S	V	L	I	V	D	E	V	H	A	Y	D	T	Y	M	N	G	L	L	E	A	V	L	K	A	Q	A	D	V	G	G	S	V	I	L	L	S	A	T	L	.	P
Query Conservation																																																																																.
Alig confidence		.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.															.
Template Conservation		.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	I	D	V	V	I	G	T	H	A	L	I	Q	E	D	V	H	.	.	.	.	.	.	.	.	.	.	F	K	N	L	G	L	V	I	I	D	E	Q	H	R	F	E	A	L	M	N	.	.	.	.	.	.	.	.	.	.	K	G	K	M	V	D	T	L	V	M	S	A	T	P	I	P
Template Known Secondary structure		.	.	.	.	.	.	.	.								T	T								.	.	.	.	.	.	.	.	.	.		S									S									S	.	.	.	.	.	.	.	.	.	.	S	S	S									S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
										472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.											.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.											.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	Q	K	Q	K	L	L	D	T	Y	G	L	H	T	D	P	V	E	N	N	S	A	Y	P	L	I	N	W	R	G	V	N	G	A	Q	R	F	D	L	L	A	H	P	E	Q	L	P	P	R	F	S	I	Q	P	E	P	I	C	L	A	D	M	L	P	D	L	T	M	L	E	R	M	I	A	A	A	N	A	G
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	M	A	L	A	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	Q	T	M	L	V	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	V	N	E	V	Y	E	F	V	R	Q	E	V	M	R	G
Template Known Secondary structure									T			S	S									S	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T												T	T	T	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.																															.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		A	Q	V	C	L	I	C	N	L	V	D	V	A	Q	V	C	Y	Q	R	L	K	E	L	N	N	T	Q	V	D	I	D	L	F	H	A	R	F	T	L	N	D	R	R	E	K	E	N	R	V	I	S	N	F	G	K	N	G	K	R	N	V	G	R	I	L	V	A	T	Q	V	V	E	Q	S	L	D	V	D	.	F
Query Conservation																																																																																.
Alig confidence																									.	.	.																								.	.	.	.	.	.	.	.																						.
Template Conservation																									.	.	.																								.	.	.	.	.	.	.	.
Template Sequence		G	Q	A	F	I	V	Y	P	L	I	K	S	A	V	E	M	Y	E	Y	L	S	K	E	.	.	.	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	.	.	.	.	.	.	.	.	A	E	G	R	Y	D	I	L	V	S	T	T	V	I	E	V	G	I	D	V	P	R	A
Template Known Secondary structure				B			B													S	G	G	G	S	.	.	.				B					S	S	S			S		S								.	.	.	.	.	.	.	.	T	T	T	S	S	S	B				S	S				S		S			T	T
Template Predicted Secondary structure																									.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.				.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.									.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
		647	.	.	650	.	.	.	.	.				.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		D	W	L	I	T	Q	H	C	P	.	.	.	A	D	L	L	F	Q	R	L	G	R	L	H	R	H	H	R	K	Y	R	P	A	G	F	E	I	P	V
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		N	V	M	V	I	E	N	P	E	R	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	G	Q	E	A	Y	C	F	L	V	V	G	D	V
Template Known Secondary structure						B		S		S	S	S		T	T								T	S			S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.